RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA488043", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 1 ✖

tax_phylum 1

  • Pisuviricota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA488043 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24676040 24676040 PRJNA488043_S_NODE_920_length_197_cov_8.375000_g909_i0 PRJNA488043 920 197 8.375 16.49875 Sapovirus sp. 1906670 Viruses Viruses 73.1 1.31e-8   NTclustered gi|2196304084|gb|MZ679047.1| 1906670 g909 i0 87.5 0.3248730964467 64 7 32 1 54 116 1443 1506 MAG: Sapovirus sp. isolate R16-k141_22382 polyprotein gene, partial cds blastn 64 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Sapovirus Sapovirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;