RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA488043" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29034510 29034510 PRJNA488043_P_NODE_668_length_2715_cov_3.404319_g226_i1 PRJNA488043 668 2715 3.404319 92.42726085 Fibrobacteria bacterium 2725311 Bacteria Bacteria 206 1.6999999999999998e-57   NR HQF54192.1 2725311 g226 i1 60.1 0.191160220994475 173 42 16.1 2 457 20 1 173 HQF54192.1 single-stranded DNA-binding protein [Fibrobacteria bacterium] diamond 519 206 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
32574352 32574352 PRJNA488043_P_NODE_659_length_2751_cov_3.385011_g226_i0 PRJNA488043 659 2751 3.385011 93.12165261 Fibrobacteria bacterium 2725311 Bacteria Bacteria 206 1.86e-57   NR HQF54192.1 2725311 g226 i0 60.1 0.1886586695747 173 42 15.9 2 457 20 1 173 HQF54192.1 single-stranded DNA-binding protein [Fibrobacteria bacterium] diamond 519 206 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;