RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA488043" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28086923 28086923 PRJNA488043_P_NODE_2345_length_993_cov_3.373444_g1116_i0 PRJNA488043 2345 993 3.373444 33.49829892 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.0369   NR MCK9429139.1 2035772 g1116 i0 36.7 0.148036253776435 49 31 14.8 0 543 689 1 49 MCK9429139.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 147 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30297983 30297983 PRJNA488043_P_NODE_19992_length_172_cov_1.678322_g17750_i0 PRJNA488043 19992 172 1.678322 2.88671384 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 53.5 2.17e-6   NR MCX5692086.1 2035772 g17750 i0 63 0.802325581395349 46 17 80.2 0 161 24 1013 1058 MCX5692086.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 138 53.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;