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contig_metadata

26 rows where bioproject = "PRJNA488043" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA488043 · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
449880 449880 PRJNA488043_P_NODE_13181_length_257_cov_4.640351_g10939_i0 PRJNA488043 13181 257 4.640351 11.92570207 Bryobacterales bacterium 2026791 Bacteria Bacteria 207 4.71e-49   NTclustered gi|2874254061|emb|OY970385.1| 2026791 g10939 i0 84.834 56.9377431906615 211 27 81 5 1 208 2774632 2774424 MAG: Bryobacterales bacterium isolate MFD03726.bin.c.1 genome assembly, chromosome: 1 blastn 14633 207 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
1724760 1724760 PRJNA488043_S_NODE_582_length_243_cov_17.392523_g571_i0 PRJNA488043 582 243 17.392523 42.26383089 Thermotomaculum hydrothermale 981385 Bacteria Bacteria 154 5.84e-33   NTclustered gi|1941646770|dbj|AP017470.1| 981385 g571 i0 90.678 249.201646090535 118 8 48 3 13 128 1258460 1258576 Thermotomaculum hydrothermale DNA, complete genome, strain: AC55 blastn 60556 154 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Thermotomaculales Thermotomaculaceae Thermotomaculum Thermotomaculum hydrothermale
3649179 3649179 PRJNA488043_S_NODE_183_length_389_cov_19.513889_g172_i0 PRJNA488043 183 389 19.513889 75.90902821 Bacteria 2 Bacteria Bacteria 296 1.56e-75   NTclustered gi|2621704223|emb|OY761614.1| 188475 g172 i0 81.316 276.825192802057 380 58 96 12 1 372 644041 643667 MAG: uncultured Holophaga sp. isolate c3c763bb-72ba-4188-aae9-c4b83244ba6d genome assembly, chromosome: 1 blastn 107685 296 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.
4276924 4276924 PRJNA488043_P_NODE_18104_length_190_cov_18.049689_g15862_i0 PRJNA488043 18104 190 18.049689 34.2944091 Acidobacteriota bacterium 1978231 Bacteria Bacteria 189 1.19e-43   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g15862 i0 96.491 154.731578947368 114 4 60 0 74 187 4652404 4652517 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 29399 189 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
4277091 4277091 PRJNA488043_S_NODE_604_length_240_cov_9.672986_g593_i0 PRJNA488043 604 240 9.672986 23.2151664 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 270 5.47e-68   NTclustered gi|76574293|gb|DQ139441.1| 171953 g593 i0 87.029 45.7458333333333 239 31 99 0 1 239 314 76 Uncultured Acidobacteria bacterium clone CAL1 23S ribosomal RNA gene, partial sequence blastn 10979 270 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6201031 6201031 PRJNA488043_P_NODE_16645_length_206_cov_3.169492_g14403_i0 PRJNA488043 16645 206 3.169492 6.52915352 Bacteria 2 Bacteria Bacteria 198 2.19e-46   NTclustered gi|2874253692|emb|OY969418.1| 171953 g14403 i0 92.199 1.3495145631068 141 10 68 1 1 141 4677234 4677095 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 278 198 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8103142 8103142 PRJNA488043_S_NODE_1227_length_174_cov_6.648276_g1216_i0 PRJNA488043 1227 174 6.648276 11.56800024 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 257 2.89e-64   NTclustered gi|2874254139|emb|OY970224.1| 171953 g1216 i0 93.605 226.068965517241 172 11 99 0 1 172 1715527 1715356 MAG: uncultured Acidobacteriota bacterium isolate MFD04967.bin.c.6 genome assembly, chromosome: 1 blastn 39336 257 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8103145 8103145 PRJNA488043_S_NODE_1487_length_159_cov_8.469231_g1476_i0 PRJNA488043 1487 159 8.469231 13.46607729 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 75 2.81e-9   NTclustered gi|2893358444|emb|OZ220736.1| 2910147 g1476 i0 87.879 21.1698113207547 66 5 40 3 1 64 3682028 3682092 MAG: Vicinamibacterales bacterium isolate e96e4bd8-36b5-4932-a7c8-d2011ef2eb69 genome assembly, chromosome: 1 blastn 3366 75 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
15752576 15752576 PRJNA488043_P_NODE_21593_length_157_cov_5.445312_g19351_i0 PRJNA488043 21593 157 5.445312 8.54913984 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 152 1.24e-32   NTclustered gi|2874253796|emb|OY969780.1| 194844 g19351 i0 89.256 275.573248407643 121 13 77 0 37 157 283872 283752 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09603.bin.c.4 genome assembly, chromosome: 1 blastn 43265 152 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
15752682 15752682 PRJNA488043_P_NODE_8313_length_401_cov_2.075269_g6112_i0 PRJNA488043 8313 401 2.075269 8.32182869 Acidobacteriota bacterium 1978231 Bacteria Bacteria 116 6.35e-28   NR MBA3271906.1 1978231 g6112 i0 67.4 1.93017456359102 86 24 61.3 1 154 399 1 86 MBA3271906.1 RtcB family protein [Acidobacteriota bacterium] diamond 774 116 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
17027239 17027239 PRJNA488043_P_NODE_5494_length_558_cov_104.514178_g3526_i0 PRJNA488043 5494 558 104.514178 583.18911324 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 350 1.7400000000000002e-91   NTclustered gi|2621701942|emb|OY761158.1| 2651171 g3526 i0 78.393 823.544802867384 560 106 99 15 1 550 3583695 3583141 MAG: Thermoanaerobaculia bacterium isolate 1b26a83f-5f0d-4c2c-8de2-47f95369405e genome assembly, chromosome: 1 blastn 459538 350 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
20851675 20851675 PRJNA488043_S_NODE_597_length_241_cov_12.216981_g586_i0 PRJNA488043 597 241 12.216981 29.44292421 Paludibaculum fermentans 1473598 Bacteria Bacteria 407 4.0199999999999995e-109   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g586 i0 97.095 1 241 7 100 0 1 241 2772798 2772558 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 241 407 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
24675897 24675897 PRJNA488043_P_NODE_21520_length_158_cov_2.255814_g19278_i0 PRJNA488043 21520 158 2.255814 3.56418612 Pseudomonadati 3379134 Bacteria Bacteria 111 1.81e-27   NR NLH10748.1 2073116 g19278 i0 100 2.9620253164557 52 0 98.7 0 1 156 106 157 NLH10748.1 terminase large subunit [Holophagae bacterium] diamond 468 111 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae       Holophagae bacterium
26949670 26949670 PRJNA488043_P_NODE_21402_length_159_cov_2.146154_g19160_i0 PRJNA488043 21402 159 2.146154 3.41238486 Terriglobales bacterium 2282142 Bacteria Bacteria 79.3 1.47e-15   NR HKS72389.1 2282142 g19160 i0 71.7 1 53 15 100 0 1 159 50 102 HKS72389.1 hypothetical protein [Terriglobales bacterium] diamond 159 79.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
27187044 27187044 PRJNA488043_P_NODE_10242_length_332_cov_2.432343_g8001_i0 PRJNA488043 10242 332 2.432343 8.07537876 Pseudomonadati 3379134 Bacteria Bacteria 59.3 2.73e-8   NR MDM7995639.1 1978231 g8001 i0 42.6 1.12048192771084 61 35 55.1 0 190 8 1 61 MDM7995639.1 GNAT family protein [Acidobacteriota bacterium] diamond 372 59.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27803019 27803019 PRJNA488043_P_NODE_16164_length_212_cov_1.868852_g13922_i0 PRJNA488043 16164 212 1.868852 3.96196624 Acidobacteriota bacterium 1978231 Bacteria Bacteria 135 8.74e-39   NR NLH78671.1 1978231 g13922 i0 95.7 0.990566037735849 70 3 99.1 0 212 3 77 146 NLH78671.1 hypothetical protein [Acidobacteriota bacterium] diamond 210 135 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28276337 28276337 PRJNA488043_P_NODE_16386_length_209_cov_2.661111_g14144_i0 PRJNA488043 16386 209 2.661111 5.56172199 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 97.1 1.1399999999999999e-24   NR HOK48163.1 2212468 g14144 i0 93.9 0.703349282296651 49 3 70.3 0 63 209 1 49 HOK48163.1 hypothetical protein [Bryobacteraceae bacterium] diamond 147 97.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28434384 28434384 PRJNA488043_P_NODE_15666_length_218_cov_2.502646_g13424_i0 PRJNA488043 15666 218 2.502646 5.45576828 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 104 1.14e-27   NR HOK48163.1 2212468 g13424 i0 96.2 0.715596330275229 52 2 71.6 0 156 1 1 52 HOK48163.1 hypothetical protein [Bryobacteraceae bacterium] diamond 156 104 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28434390 28434390 PRJNA488043_P_NODE_21046_length_162_cov_2.187970_g18804_i0 PRJNA488043 21046 162 2.18797 3.5445114 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 40.4 0.032   NR HKG81051.1 2283092 g18804 i0 38.9 0.666666666666667 36 22 66.7 0 145 38 57 92 HKG81051.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 108 40.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29334484 29334484 PRJNA488043_P_NODE_9989_length_340_cov_2.295820_g7749_i0 PRJNA488043 9989 340 2.29582 7.805788 Pseudomonadati 3379134 Bacteria Bacteria 59.3 3e-8   NR MDM7995639.1 1978231 g7749 i0 42.6 1.09411764705882 61 35 53.8 0 190 8 1 61 MDM7995639.1 GNAT family protein [Acidobacteriota bacterium] diamond 372 59.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29381581 29381581 PRJNA488043_P_NODE_21909_length_155_cov_1.968254_g19667_i0 PRJNA488043 21909 155 1.968254 3.0507937 Acidobacteriota bacterium 1978231 Bacteria Bacteria 80.5 3.99e-16   NR MEY4636517.1 1978231 g19667 i0 76.5 0.987096774193548 51 12 98.7 0 154 2 290 340 MEY4636517.1 hypothetical protein [Acidobacteriota bacterium] diamond 153 80.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29476003 29476003 PRJNA488043_P_NODE_6450_length_498_cov_2.264392_g4390_i0 PRJNA488043 6450 498 2.264392 11.27667216 Acidobacteriota bacterium 1978231 Bacteria Bacteria 142 1.4799999999999999e-40   NR MBF84493.1 1978231 g4390 i0 54.6 0.650602409638554 108 49 65.1 0 146 469 1 108 MBF84493.1 hypothetical protein [Acidobacteriota bacterium] diamond 324 142 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30392748 30392748 PRJNA488043_P_NODE_6513_length_495_cov_2.259657_g4447_i0 PRJNA488043 6513 495 2.259657 11.18530215 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 68.9 1.82e-10   NR HOQ61813.1 2910147 g4447 i0 42.9 0.721212121212121 119 65 72.1 2 130 486 29 144 HOQ61813.1 hypothetical protein [Vicinamibacterales bacterium] diamond 357 68.9 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31276901 31276901 PRJNA488043_P_NODE_5735_length_542_cov_2.210526_g3748_i0 PRJNA488043 5735 542 2.210526 11.98105092 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 148 1.37e-37   NR HEY2091234.1 2651171 g3748 i0 42.6 3.08856088560886 188 99 99.6 3 3 542 252 438 HEY2091234.1 replicative DNA helicase [Thermoanaerobaculia bacterium] diamond 1674 148 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31372106 31372106 PRJNA488043_P_NODE_12256_length_277_cov_2.197581_g10015_i0 PRJNA488043 12256 277 2.197581 6.08729937 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 101 1.52e-22   NR HKS24683.1 2651171 g10015 i0 48.9 1.90613718411552 92 47 99.6 0 2 277 244 335 HKS24683.1 replicative DNA helicase [Thermoanaerobaculia bacterium] diamond 528 101 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
32162929 32162929 PRJNA488043_P_NODE_10618_length_320_cov_2.182131_g8377_i0 PRJNA488043 10618 320 2.182131 6.9828192 Terracidiphilus sp. 1964191 Bacteria Bacteria 47.4 0.00119   NR HLY40469.1 1964191 g8377 i0 43.5 0.58125 62 31 54.4 1 36 209 121 182 HLY40469.1 hypothetical protein [Terracidiphilus sp.] diamond 186 47.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;