RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA488043" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 5 ✖

bioproject 1

  • PRJNA488043 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15752551 15752551 PRJNA488043_P_NODE_19533_length_176_cov_6.346939_g17291_i0 PRJNA488043 19533 176 6.346939 11.17061264 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 108 3.12e-19   NTclustered gi|2413975758|gb|OP933682.1| 3003968 g17291 i0 100 1.14772727272727 58 0 66 0 119 176 3225 3168 MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds blastn 202 108 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus
16400405 16400405 PRJNA488043_P_NODE_11213_length_302_cov_2.930403_g8972_i0 PRJNA488043 11213 302 2.930403 8.84981706 Arfiviricetes 2732423 Viruses Viruses 553 6.32e-153   NTclustered gi|2626080284|gb|OR270688.1| 1954248 g8972 i0 99.669 6 302 1 100 0 1 302 1076 775 MAG: Circoviridae sp. isolate GL83, complete genome blastn 1812 553 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard
25324109 25324109 PRJNA488043_P_NODE_14800_length_230_cov_3.930348_g12558_i0 PRJNA488043 14800 230 3.930348 9.0398004 Arfiviricetes 2732423 Viruses Viruses 425 1.05e-114   NTclustered gi|2626080284|gb|OR270688.1| 1954248 g12558 i0 100 6.62608695652174 230 0 100 0 1 230 570 341 MAG: Circoviridae sp. isolate GL83, complete genome blastn 1524 425 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard
25324224 25324224 PRJNA488043_P_NODE_7000_length_465_cov_4.458716_g4882_i0 PRJNA488043 7000 465 4.458716 20.7330294 Viruses 10239 Viruses Viruses 859 0   NTclustered gi|2094552987|gb|MZ824236.1| 2875810 g4882 i0 100 6.55913978494624 465 0 100 0 1 465 2343 1879 Reagent-associated CRESS-like virus 2 isolate 8 replicase-like gene, partial sequence blastn 3050 859 1 Viruses   Shotokuvirae Cressdnaviricota         Reagent-associated CRESS-like virus 2
25324236 25324236 PRJNA488043_P_NODE_7640_length_433_cov_2.220297_g5476_i0 PRJNA488043 7640 433 2.220297 9.61388601 Arfiviricetes 2732423 Viruses Viruses 761 0   NTclustered gi|2626080284|gb|OR270688.1| 1954248 g5476 i0 98.383 6.44110854503464 433 7 100 0 1 433 1213 1645 MAG: Circoviridae sp. isolate GL83, complete genome blastn 2789 761 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;