RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA488043", tax_kingdom = "Pseudomonadati" and tax_phylum = "Calditrichota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Calditrichota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA488043 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9377611 9377611 PRJNA488043_P_NODE_12468_length_273_cov_1.545082_g10227_i0 PRJNA488043 12468 273 1.545082 4.21807386 Caldithrix abyssi 187145 Bacteria Bacteria 183 8.519999999999997e-42   NTclustered gi|1108618394|gb|CP018099.1| 880073 g10227 i0 83.173 1.52747252747253 208 27 75 7 63 266 1053357 1053560 Caldithrix abyssi DSM 13497, complete genome blastn 417 183 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
28024000 28024000 PRJNA488043_P_NODE_8045_length_413_cov_2.140625_g5854_i0 PRJNA488043 8045 413 2.140625 8.84078125 Calditrichia bacterium 2268178 Bacteria Bacteria 46.6 0.0095   NR MEE9117858.1 2268178 g5854 i0 55 0.290556900726392 40 18 29.1 0 133 14 27 66 MEE9117858.1 phage terminase large subunit [Calditrichia bacterium] diamond 120 46.6 1 Bacteria   Pseudomonadati Calditrichota Calditrichia       Calditrichia bacterium
28560778 28560778 PRJNA488043_P_NODE_16687_length_206_cov_2.090395_g14445_i0 PRJNA488043 16687 206 2.090395 4.3062137 Calditrichia bacterium 2268178 Bacteria Bacteria 52.4 8.96e-6   NR MEE9117855.1 2268178 g14445 i0 49 0.742718446601942 51 26 74.3 0 52 204 20 70 MEE9117855.1 phage protease [Calditrichia bacterium] diamond 153 52.4 1 Bacteria   Pseudomonadati Calditrichota Calditrichia       Calditrichia bacterium
31118714 31118714 PRJNA488043_P_NODE_17295_length_199_cov_2.664706_g15053_i0 PRJNA488043 17295 199 2.664706 5.30276494 Calditrichia bacterium 2268178 Bacteria Bacteria 47.4 4.85e-4   NR MEE9117842.1 2268178 g15053 i0 46.7 0.678391959798995 45 24 67.8 0 135 1 345 389 MEE9117842.1 phage tail tube protein [Calditrichia bacterium] diamond 135 47.4 1 Bacteria   Pseudomonadati Calditrichota Calditrichia       Calditrichia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;