RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA488043", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28450589 28450589 PRJNA488043_S_NODE_6_length_1249_cov_20.075410_g3_i0 PRJNA488043 6 1249 20.07541 250.7418709 Gammaretrovirus 153135 Viruses Viruses 825 3.61e-283   NR NP_057933.2 11801 g3 i0 99.8 7.70296236989592 401 1 96.3 0 42 1244 658 1058 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 9621 825 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31798997 31798997 PRJNA488043_S_NODE_17_length_741_cov_12.750000_g13_i0 PRJNA488043 17 741 12.75 94.4775 Gammaretrovirus 153135 Viruses Viruses 483 2.539999999999999e-159   NR NP_040333.1 11795 g13 i0 96.7 5.97570850202429 246 8 99.6 0 3 740 521 766 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 4428 487 0.991786447638604 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;