RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA488043", tax_kingdom = "Metazoa" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA488043 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4276854 4276854 PRJNA488043_P_NODE_11824_length_287_cov_1.542636_g9583_i0 PRJNA488043 11824 287 1.542636 4.42736532 Kudoa carcharhini 858677 Cnidaria other_Eukaryota 63.9 1.23e-5   NTclustered gi|300089085|gb|GU446630.1| 858677 g9583 i0 91.304 12.0348432055749 46 4 16 0 242 287 88 43 Kudoa carcharhini isolate Cc1 28S ribosomal RNA gene, partial sequence blastn 3454 63.9 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Multivalvulida Kudoidae Kudoa Kudoa carcharhini
11301132 11301132 PRJNA488043_P_NODE_16469_length_208_cov_2.530726_g14227_i0 PRJNA488043 16469 208 2.530726 5.26391008 Rhizostomeae 37535 Cnidaria other_Eukaryota 110 1.07e-19   NTclustered gi|2862235116|gb|PQ647263.1| 880218 g14227 i0 88.043 40.9759615384615 92 11 44 0 1 92 6892 6801 Cephea cephea isolate AGC18069 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8523 110 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Cepheidae Cephea Cephea cephea
20224288 20224288 PRJNA488043_P_NODE_16636_length_206_cov_4.813559_g14394_i0 PRJNA488043 16636 206 4.813559 9.91593154 Scleractinia 6125 Cnidaria other_Eukaryota 139 1.34e-28   NTclustered gi|8468593|gb|AF263354.1| 126652 g14394 i0 92.784 16.8834951456311 97 6 47 1 4 99 241 145 Echinophyllia orpheensis large subunit ribosomal RNA gene, partial sequence; and intergenic spacer region, partial sequence blastn 3478 139 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Lobophylliidae Echinophyllia Echinophyllia orpheensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;