RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA488043", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA488043 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6827549 6827549 PRJNA488043_P_NODE_6826_length_476_cov_5.451902_g4727_i0 PRJNA488043 6826 476 5.451902 25.95105352 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 800 0   NTclustered gi|820695469|tpe|LN714488.1| 572307 g4727 i0 97.053 60.6323529411765 475 14 100 0 2 476 116671 116197 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 28861 800 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
8102849 8102849 PRJNA488043_P_NODE_10667_length_318_cov_4.328720_g8426_i0 PRJNA488043 10667 318 4.32872 13.7653296 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 460 4.1799999999999997e-125   NTclustered gi|820695469|tpe|LN714488.1| 572307 g8426 i0 97.753 6.66666666666667 267 6 99 0 7 273 117501 117235 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 2120 460 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
24675855 24675855 PRJNA488043_P_NODE_17820_length_193_cov_10.719512_g15578_i0 PRJNA488043 17820 193 10.719512 20.68865816 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 255 1.18e-63   NTclustered gi|820695469|tpe|LN714488.1| 572307 g15578 i0 95.625 60.2487046632124 160 6 100 1 33 192 96500 96658 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 11628 255 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;