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contig_metadata

20 rows where bioproject = "PRJNA488043", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 20 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 20 ✖

bioproject 1

  • PRJNA488043 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3000571 3000571 PRJNA488043_P_NODE_13703_length_248_cov_4.168950_g11461_i0 PRJNA488043 13703 248 4.16895 10.338996 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 207 4.52e-49   NTclustered gi|2874253811|emb|OY969795.1| 464461 g11461 i0 82.143 195.665322580645 252 35 99 10 1 246 657284 657037 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 48525 207 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
4926076 4926076 PRJNA488043_P_NODE_3064_length_843_cov_5.181818_g869_i1 PRJNA488043 3064 843 5.181818 43.68272574 Candidatus Protochlamydia 282132 Bacteria Bacteria 774 0   NTclustered gi|1691252667|emb|BX908798.2| 264201 g869 i1 83.506 154.143534994069 867 105 99 25 2 843 2153764 2154617 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 129943 774 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
10653593 10653593 PRJNA488043_P_NODE_21849_length_155_cov_2.960317_g19607_i0 PRJNA488043 21849 155 2.960317 4.58849135 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 237 3.2800000000000004e-58   NTclustered gi|971146634|emb|LN879502.1| 389348 g19607 i0 94.268 184.122580645161 157 5 100 2 1 155 1251568 1251414 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 28539 237 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
12576942 12576942 PRJNA488043_P_NODE_3090_length_838_cov_2.349815_g1618_i0 PRJNA488043 3090 838 2.349815 19.6914497 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 170 1.6599999999999998e-45   NR MFI0436073.1 2052176 g1618 i0 88.1 0.361575178997613 101 12 36.2 0 833 531 215 315 MFI0436073.1 replicative DNA helicase [Parachlamydiaceae bacterium] diamond 303 170 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
15752626 15752626 PRJNA488043_P_NODE_3973_length_704_cov_3.973333_g2263_i0 PRJNA488043 3973 704 3.973333 27.97226432 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 976 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g2263 i0 91.667 181.075284090909 708 53 100 6 1 704 1250918 1250213 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 127477 976 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
16400574 16400574 PRJNA488043_P_NODE_6893_length_472_cov_6.372460_g4788_i0 PRJNA488043 6893 472 6.37246 30.0780112 Candidatus Protochlamydia 282132 Bacteria Bacteria 549 1.3399999999999996e-151   NTclustered gi|1691252667|emb|BX908798.2| 264201 g4788 i0 88.387 83.6398305084746 465 43 97 9 1 460 1251096 1251554 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 39478 549 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
17675630 17675630 PRJNA488043_P_NODE_3174_length_822_cov_2.387137_g1671_i0 PRJNA488043 3174 822 2.387137 19.62226614 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 286 2.74e-90   NR MFI0436073.1 2052176 g1671 i0 61.6 0.989051094890511 271 97 96.7 2 6 800 215 484 MFI0436073.1 replicative DNA helicase [Parachlamydiaceae bacterium] diamond 813 286 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
18949337 18949337 PRJNA488043_P_NODE_1195_length_1551_cov_2.419842_g454_i0 PRJNA488043 1195 1551 2.419842 37.53174942 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 283 6.510000000000001e-86   NR MFI0436073.1 2052176 g454 i0 61.3 0.524177949709865 271 98 51.3 2 1546 752 215 484 MFI0436073.1 replicative DNA helicase [Parachlamydiaceae bacterium] diamond 813 283 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27518730 27518730 PRJNA488043_P_NODE_603_length_3079_cov_3.211803_g202_i0 PRJNA488043 603 3079 3.211803 98.89141437 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 149 6.399999999999999e-36   NR MFI0435901.1 2052176 g202 i0 80.7 0.0857421240662553 88 17 8.6 0 647 384 183 270 MFI0435901.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 264 149 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27803022 27803022 PRJNA488043_P_NODE_1984_length_1107_cov_3.030612_g897_i0 PRJNA488043 1984 1107 3.030612 33.54887484 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 251 2.25e-75   NR MFI0436073.1 2052176 g897 i0 76.4 0.447154471544715 165 39 44.7 0 613 1107 47 211 MFI0436073.1 replicative DNA helicase [Parachlamydiaceae bacterium] diamond 495 251 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27897462 27897462 PRJNA488043_P_NODE_9965_length_341_cov_1.951923_g7725_i0 PRJNA488043 9965 341 1.951923 6.65605743 Parachlamydiales bacterium 2052178 Bacteria Bacteria 80.9 2.91e-15   NR MFA6916993.1 2052178 g7725 i0 61.6 1.9266862170088 73 27 64.2 1 332 114 287 358 MFA6916993.1 hypothetical protein [Parachlamydiales bacterium] diamond 657 80.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
28023997 28023997 PRJNA488043_P_NODE_6265_length_510_cov_3.162162_g4227_i0 PRJNA488043 6265 510 3.162162 16.1270262 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 155 1.38e-40   NR MFI0436039.1 2052176 g4227 i0 67 0.605882352941176 103 34 60.6 0 201 509 468 570 MFI0436039.1 BT4734/BF3469 family protein [Parachlamydiaceae bacterium] diamond 309 155 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28560775 28560775 PRJNA488043_P_NODE_11787_length_288_cov_1.679537_g9546_i0 PRJNA488043 11787 288 1.679537 4.83706656 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 103 2.0199999999999994e-23   NR PIS01510.1 1973935 g9546 i0 56.4 1.05208333333333 101 37 97.9 3 282 1 530 630 PIS01510.1 MAG: hypothetical protein COT84_02005 [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9] diamond 303 103 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9
28718590 28718590 PRJNA488043_P_NODE_4467_length_647_cov_8.441748_g2654_i0 PRJNA488043 4467 647 8.441748 54.61810956 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 353 4.109999999999998e-121   NR MFI0436135.1 2052176 g2654 i0 100 0.792890262751159 171 0 79.3 0 2 514 75 245 MFI0436135.1 terminase large subunit [Parachlamydiaceae bacterium] diamond 513 353 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28939671 28939671 PRJNA488043_P_NODE_608_length_3047_cov_3.252154_g202_i1 PRJNA488043 608 3047 3.252154 99.09313238 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 149 6.32e-36   NR MFI0435901.1 2052176 g202 i1 80.7 0.0866425992779783 88 17 8.7 0 2449 2712 183 270 MFI0435901.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 264 149 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29539335 29539335 PRJNA488043_P_NODE_610_length_3031_cov_3.242838_g202_i2 PRJNA488043 610 3031 3.242838 98.29041978 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 153 2.1399999999999996e-37   NR MFI0435901.1 2052176 g202 i2 83 0.0870999670075882 88 15 8.7 0 2433 2696 183 270 MFI0435901.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 264 153 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30044622 30044622 PRJNA488043_P_NODE_4911_length_605_cov_3.350694_g897_i1 PRJNA488043 4911 605 3.350694 20.2716987 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 115 2.07e-27   NR MFI0436074.1 2052176 g897 i1 53.5 0.629752066115702 127 52 60.5 4 126 491 149 273 MFI0436074.1 DUF6291 domain-containing protein [Parachlamydiaceae bacterium] diamond 381 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30392749 30392749 PRJNA488043_P_NODE_6793_length_478_cov_3.195991_g4699_i0 PRJNA488043 6793 478 3.195991 15.27683698 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 155 9.53e-41   NR MFI0436039.1 2052176 g4699 i0 67 0.646443514644351 103 34 64.6 0 310 2 468 570 MFI0436039.1 BT4734/BF3469 family protein [Parachlamydiaceae bacterium] diamond 309 155 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30487169 30487169 PRJNA488043_P_NODE_21313_length_160_cov_1.656489_g19071_i0 PRJNA488043 21313 160 1.656489 2.6503824 Parachlamydia sp. 2052048 Bacteria Bacteria 95.5 3.47e-23   NR MCE2983410.1 2052048 g19071 i0 84.3 0.95625 51 8 95.6 0 157 5 102 152 MCE2983410.1 hypothetical protein [Parachlamydia sp.] diamond 153 95.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
32888765 32888765 PRJNA488043_P_NODE_1040_length_1742_cov_4.063631_g368_i0 PRJNA488043 1040 1742 4.063631 70.78845202 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 519 1.15e-174   NR MFI0436039.1 2052176 g368 i0 64.7 0.687141216991963 399 138 68.5 2 1196 3 1 397 MFI0436039.1 BT4734/BF3469 family protein [Parachlamydiaceae bacterium] diamond 1197 519 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;