RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA488043", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA488043 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7476063 7476063 PRJNA488043_S_NODE_1626_length_151_cov_6.467213_g1615_i0 PRJNA488043 1626 151 6.467213 9.76549163 Adineta 104781 Rotifera other_Eukaryota 224 2.4699999999999993e-54   NTclustered gi|1005055598|gb|KU860741.1| 1813167 g1615 i0 93.421 19.3973509933775 152 9 100 1 1 151 151 302 Adineta vaga complex sp. D JFF-2016 isolate H3-14b 28S ribosomal RNA gene, partial sequence blastn 2929 224 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. D JFF-2016
7476076 7476076 PRJNA488043_S_NODE_946_length_195_cov_2.108434_g935_i0 PRJNA488043 946 195 2.108434 4.1114463 Metazoa 33208 Rotifera other_Eukaryota 361 2.46e-95   NTclustered gi|37785582|gb|AY210469.1| 96448 g935 i0 100 67.9076923076923 195 0 100 0 1 195 1817 1623 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 13242 361 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
15126042 15126042 PRJNA488043_S_NODE_1392_length_164_cov_2.748148_g1381_i0 PRJNA488043 1392 164 2.748148 4.50696272 Metazoa 33208 Rotifera other_Eukaryota 303 3.42e-78   NTclustered gi|37785582|gb|AY210469.1| 96448 g1381 i0 100 26.6768292682927 164 0 100 0 1 164 2103 1940 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 4375 303 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;