RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA488043", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA488043 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9377811 9377811 PRJNA488043_P_NODE_7388_length_445_cov_7.225962_g5241_i0 PRJNA488043 7388 445 7.225962 32.1555309 Gnathostoma spinigerum 75299 Nematoda Nematoda 144 5.84e-42   NR MFH4985130.1 75299 g5241 i0 92.5 0.451685393258427 67 5 45.2 0 130 330 1 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 201 144 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29696922 29696922 PRJNA488043_P_NODE_19850_length_173_cov_2.201389_g17608_i0 PRJNA488043 19850 173 2.201389 3.80840297 Gnathostoma spinigerum 75299 Nematoda Nematoda 67 5.03e-13   NR MFH4985130.1 75299 g17608 i0 87.9 0.572254335260116 33 4 57.2 0 101 3 1 33 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 99 67 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29918502 29918502 PRJNA488043_P_NODE_12811_length_265_cov_2.177966_g10570_i0 PRJNA488043 12811 265 2.177966 5.7716099 Gnathostoma spinigerum 75299 Nematoda Nematoda 107 1.66e-28   NR MFH4985130.1 75299 g10570 i0 89.8 0.554716981132075 49 5 55.5 0 263 117 19 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 147 107 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
30297995 30297995 PRJNA488043_P_NODE_8832_length_379_cov_9.160000_g6613_i0 PRJNA488043 8832 379 9.16 34.7164 Gnathostoma spinigerum 75299 Nematoda Nematoda 149 2.65e-44   NR MFH4985130.1 75299 g6613 i0 100 0.530343007915567 67 0 53 0 127 327 1 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 201 149 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;