RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA488043", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA488043 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22774871 22774871 PRJNA488043_P_NODE_15158_length_225_cov_7.540816_g12916_i0 PRJNA488043 15158 225 7.540816 16.966836 Endochytrium 109937 Fungi Fungi 56.5 0.002   NTclustered gi|1866582723|gb|MT730898.1| 2011712 g12916 i0 100 0.266666666666667 30 0 13 0 163 192 4215 4186 Cladochytriales sp. isolate JEL0931 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 60 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales     Cladochytriales sp.
24676015 24676015 PRJNA488043_S_NODE_1000_length_190_cov_5.937888_g989_i0 PRJNA488043 1000 190 5.937888 11.2819872 Polyrhizophydium stewartii 2732419 Fungi Fungi 65.8 2.1e-6   NTclustered gi|1866582724|gb|MT730899.1| 2732419 g989 i0 93.182 2.34736842105263 44 3 23 0 116 159 4323 4366 Polyrhizophydium stewartii isolate JEL0932 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 446 65.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Polyrhizophydium Polyrhizophydium stewartii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;