RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA488043", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 11 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 11 ✖

bioproject 1

  • PRJNA488043 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5553605 5553605 PRJNA488043_S_NODE_825_length_207_cov_4.174157_g814_i0 PRJNA488043 825 207 4.174157 8.64050499 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 329 7.47e-86   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g814 i0 95.631 64.0579710144928 206 7 99 2 3 207 1553070 1553274 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 13260 329 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
8103138 8103138 PRJNA488043_S_NODE_1067_length_185_cov_5.121795_g1056_i0 PRJNA488043 1067 185 5.121795 9.47532075 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 287 3.98e-73   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1056 i0 97.059 178.216216216216 170 5 92 0 3 172 1553886 1553717 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 32970 287 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
9377863 9377863 PRJNA488043_S_NODE_848_length_204_cov_5.708571_g837_i0 PRJNA488043 848 204 5.708571 11.64548484 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 243 9.84e-60   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g837 i0 88.293 571.289215686274 205 21 100 3 1 204 1553068 1552866 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 116543 243 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
10653706 10653706 PRJNA488043_S_NODE_1249_length_173_cov_3.354167_g1238_i0 PRJNA488043 1249 173 3.354167 5.80270891 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 279 6.12e-71   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1238 i0 96.988 41.1849710982659 166 5 96 0 8 173 1555022 1554857 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 7125 279 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
13851712 13851712 PRJNA488043_S_NODE_471_length_271_cov_21.933884_g460_i0 PRJNA488043 471 271 21.933884 59.44082564 Pseudomonadati 3379134 Bacteria Bacteria 217 8.329999999999999e-52   NTclustered gi|2893356058|emb|OZ220481.1| 2910168 g460 i0 82.156 130.30258302583 269 33 96 13 11 271 425088 425349 MAG: Longimicrobiales bacterium isolate 6a12c18f-4201-4084-a6a2-16e5aedc472d genome assembly, chromosome: 1 blastn 35312 219 0.990867579908676 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
14478589 14478589 PRJNA488043_S_NODE_1052_length_186_cov_5.904459_g1041_i0 PRJNA488043 1052 186 5.904459 10.98229374 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 311 2.38e-80   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g1041 i0 96.774 25.0430107526882 186 6 100 0 1 186 1553361 1553546 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 4658 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
29444494 29444494 PRJNA488043_P_NODE_22630_length_150_cov_1.371901_g20388_i0 PRJNA488043 22630 150 1.371901 2.0578515 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 62 1.62e-9   NR HEX4935314.1 2026741 g20388 i0 59.6 0.94 47 18 94 1 8 148 89 134 HEX4935314.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 141 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29791871 29791871 PRJNA488043_P_NODE_20411_length_168_cov_1.007194_g18169_i0 PRJNA488043 20411 168 1.007194 1.69208592 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.1 0.00833   NR HXG72580.1 2026741 g18169 i0 55.8 1.85714285714286 52 20 92.9 2 5 160 130 178 HXG72580.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 312 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30771612 30771612 PRJNA488043_P_NODE_7974_length_416_cov_2.687339_g5787_i0 PRJNA488043 7974 416 2.687339 11.17933024 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 64.3 1.07e-9   NR MBK7786953.1 2026742 g5787 i0 41.2 0.612980769230769 85 40 60.6 2 301 50 97 172 MBK7786953.1 hypothetical protein [Gemmatimonadota bacterium] diamond 255 64.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31308593 31308593 PRJNA488043_P_NODE_16235_length_211_cov_2.038462_g13993_i0 PRJNA488043 16235 211 2.038462 4.30115482 Gemmatimonas sp. SG8_38_2 1703358 Bacteria Bacteria 117 8.880000000000001e-29   NR KPK66790.1 1703358 g13993 i0 75.4 0.981042654028436 69 17 98.1 0 211 5 586 654 KPK66790.1 MAG: hypothetical protein AMS21_01150 [Gemmatimonas sp. SG8_38_2] diamond 207 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. SG8_38_2
31957259 31957259 PRJNA488043_P_NODE_17797_length_194_cov_1.806061_g15555_i0 PRJNA488043 17797 194 1.806061 3.50375834 Pseudomonadati 3379134 Bacteria Bacteria 50.1 3.97e-5   NR HVH40041.1 2026741 g15555 i0 41.7 2.8298969072165 60 35 92.8 0 192 13 143 202 HVH40041.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 549 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;