RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA485080", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 12 ✖

tax_phylum 1

  • Myxococcota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA485080 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1723982 1723982 PRJNA485080_P_NODE_37982_length_243_cov_1.382353_g37888_i0 PRJNA485080 37982 243 1.382353 3.35911779 Archangium gephyra 48 Bacteria Bacteria 305 1.52e-78   NTclustered gi|827418478|gb|CP011509.1| 48 g37888 i0 89.3 2.00411522633745 243 26 100 0 1 243 8431804 8431562 Archangium gephyra strain DSM 2261, complete genome blastn 487 305 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
1724112 1724112 PRJNA485080_P_NODE_8002_length_360_cov_1.404181_g7908_i0 PRJNA485080 8002 360 1.404181 5.0550516 Pendulispora rubella 2741070 Bacteria Bacteria 496 1.31e-135   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g7908 i0 91.69 155.525 361 25 100 3 1 360 7289535 7289179 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 55989 496 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
8102111 8102111 PRJNA485080_P_NODE_20047_length_259_cov_2.483871_g19953_i0 PRJNA485080 20047 259 2.483871 6.43322589 Labilithrix luteola 1391654 Bacteria Bacteria 342 1.25e-89   NTclustered gi|913610804|gb|CP012333.1| 1391654 g19953 i0 90.769 163.783783783784 260 18 99 5 3 259 3941985 3942241 Labilithrix luteola strain DSM 27648, complete genome blastn 42420 342 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
11300638 11300638 PRJNA485080_P_NODE_21269_length_251_cov_1.808989_g21175_i0 PRJNA485080 21269 251 1.808989 4.54056239 Pendulispora 3375062 Bacteria Bacteria 433 6.95e-117   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g21175 i0 97.992 272.05577689243 249 5 99 0 3 251 7287167 7287415 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 68286 433 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
17675031 17675031 PRJNA485080_P_NODE_31514_length_247_cov_0.885057_g31420_i0 PRJNA485080 31514 247 0.885057 2.18609079 Kofleriaceae bacterium 2212474 Bacteria Bacteria 156 5.31e-45   NR HEX7703479.1 2212474 g31420 i0 96.3 1.9919028340081 82 3 99.6 0 247 2 59 140 HEX7703479.1 malate dehydrogenase [Kofleriaceae bacterium] diamond 492 156 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28339604 28339604 PRJNA485080_P_NODE_28386_length_248_cov_0.880000_g28292_i0 PRJNA485080 28386 248 0.88 2.1824 Myxococcales bacterium 2026763 Bacteria Bacteria 43.5 0.0215   NR GMV44267.1 2026763 g28292 i0 33.8 0.82258064516129 68 35 77.4 2 243 52 597 658 GMV44267.1 MAG: hypothetical protein AMXMBFR64_59830 [Myxococcales bacterium] diamond 204 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28592281 28592281 PRJNA485080_P_NODE_18647_length_269_cov_1.112245_g18553_i0 PRJNA485080 18647 269 1.112245 2.99193905 Archangium sp. 1872627 Bacteria Bacteria 45.4 0.00566   NR WP_407755685.1 1872627 g18553 i0 47.7 0.490706319702602 44 17 43.5 2 52 168 9 51 WP_407755685.1 DUF6311 domain-containing protein [Archangium sp.] diamond 132 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28812877 28812877 PRJNA485080_P_NODE_32988_length_246_cov_0.890173_g32894_i0 PRJNA485080 32988 246 0.890173 2.18982558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0198   NR MBI5827122.1 2026735 g32894 i0 34.6 0.634146341463415 52 25 52.4 1 20 148 140 191 MBI5827122.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 156 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29113551 29113551 PRJNA485080_P_NODE_24148_length_250_cov_0.870056_g24054_i0 PRJNA485080 24148 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 91.3 7.91e-20   NR MBS1151255.1 2484252 g24054 i0 65.2 7.608 66 23 79.2 0 53 250 9 74 MBS1151255.1 oxidoreductase [Myxococcaceae bacterium] diamond 1902 91.7 0.995637949836423 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30613303 30613303 PRJNA485080_P_NODE_17453_length_276_cov_1.492611_g17359_i0 PRJNA485080 17453 276 1.492611 4.11960636 Polyangium aurulentum 2567896 Bacteria Bacteria 43.1 0.0429   NR WP_169507605.1 2567896 g17359 i0 35.2 0.58695652173913 54 24 46.7 2 10 138 868 921 WP_169507605.1 MopE-related protein [Polyangium aurulentum] diamond 162 43.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
31403682 31403682 PRJNA485080_P_NODE_30236_length_247_cov_0.885057_g30142_i0 PRJNA485080 30236 247 0.885057 2.18609079 Myxococcaceae bacterium 2484252 Bacteria Bacteria 48.1 4.55e-4   NR HEY8206058.1 2484252 g30142 i0 37.8 0.995951417004049 82 42 92.3 2 9 236 139 217 HEY8206058.1 M35 family metallo-endopeptidase [Myxococcaceae bacterium] diamond 246 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
32258023 32258023 PRJNA485080_P_NODE_10118_length_334_cov_1.180077_g10024_i0 PRJNA485080 10118 334 1.180077 3.94145718 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84 3.64e-16   NR MBL8787667.1 2026735 g10024 i0 40.2 1.82335329341317 102 59 90.7 2 1 303 162 262 MBL8787667.1 FAD-binding oxidoreductase [Deltaproteobacteria bacterium] diamond 609 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;