RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA485080" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA485080 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6826602 6826602 PRJNA485080_P_NODE_18746_length_268_cov_1.379487_g18652_i0 PRJNA485080 18746 268 1.379487 3.69702516 Bdellovibrio 958 Bacteria Bacteria 157 3.8699999999999985e-43   NR WP_061833456.1 959 g18652 i0 88.8 1.99253731343284 89 10 99.6 0 267 1 246 334 WP_061833456.1 cation acetate symporter [Bdellovibrio bacteriovorus] diamond 534 158 0.993670886075949 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
14477713 14477713 PRJNA485080_P_NODE_26792_length_249_cov_0.875000_g26698_i0 PRJNA485080 26792 249 0.875 2.17875 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 313 9.359999999999999e-81   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g26698 i0 89.879 337.923694779116 247 20 99 3 3 249 666443 666684 Bdellovibrio sp. qaytius chromosome, complete genome blastn 84143 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
27202541 27202541 PRJNA485080_P_NODE_38402_length_243_cov_0.905882_g38308_i0 PRJNA485080 38402 243 0.905882 2.20129326 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 104 3.1799999999999998e-24   NR WP_014102970.1 349221 g38308 i0 60.5 1 81 32 100 0 243 1 23 103 WP_014102970.1 hypothetical protein [Micavibrio aeruginosavorus] diamond 243 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;