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contig_metadata

17 rows where bioproject = "PRJNA485080" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 17 ✖

bioproject 1

  • PRJNA485080 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8102090 8102090 PRJNA485080_P_NODE_18187_length_272_cov_0.869347_g18093_i0 PRJNA485080 18187 272 0.869347 2.36462384 IAP H10 11968 Viruses Viruses 172 1.84e-38   NTclustered gi|61590|emb|X00024.1| 11968 g18093 i0 82.828 47.6397058823529 198 29 72 5 78 272 164 359 Syrian hamster intracisternal A particle H10 3'end with long terminal repeat and flanking region blastn 12958 172 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles IAP H10
10652708 10652708 PRJNA485080_P_NODE_16529_length_282_cov_1.641148_g16435_i0 PRJNA485080 16529 282 1.641148 4.62803736 Retroviridae sp. 2681591 Viruses Viruses 184 1.7e-52   NR XNT20575.1 2681591 g16435 i0 87.1 0.98936170212766 93 12 98.9 0 2 280 474 566 XNT20575.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 279 184 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
23401211 23401211 PRJNA485080_P_NODE_12359_length_314_cov_0.834025_g12265_i0 PRJNA485080 12359 314 0.834025 2.6188385 Intracisternal A-particles 11749 Viruses Viruses 123 3.52e-30   NR pir|D40899| 11751 g12265 i0 77 1.4140127388535 74 17 70.7 0 93 314 82 155 pir|D40899| pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34 [Chinese hamster Intracisternal A-particle CHIAP34] diamond 444 123 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Chinese hamster Intracisternal A-particle CHIAP34
23401679 23401679 PRJNA485080_P_NODE_4419_length_451_cov_1.222222_g4325_i0 PRJNA485080 4419 451 1.222222 5.51222122 Retroviridae sp. 2681591 Viruses Viruses 89.7 1.38e-17   NR XNT20490.1 2681591 g4325 i0 50 0.545454545454545 82 41 54.5 0 3 248 173 254 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 246 89.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
26918150 26918150 PRJNA485080_P_NODE_9882_length_337_cov_1.071970_g9788_i0 PRJNA485080 9882 337 1.07197 3.6125389 Retroviridae sp. 2681591 Viruses Viruses 103 3.75e-23   NR XNT20490.1 2681591 g9788 i0 47.6 0.934718100890208 105 55 93.5 0 23 337 240 344 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 315 103 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
27076297 27076297 PRJNA485080_P_NODE_1682_length_680_cov_1.602965_g1596_i0 PRJNA485080 1682 680 1.602965 10.900162 Simian retrovirus 4 723802 Viruses Viruses 73.6 4.98e-11   NR ADC52788.1 723802 g1596 i0 41.3 0.644117647058824 75 44 33.1 0 61 285 389 463 ADC52788.1 pol protein, partial [Simian retrovirus 4] diamond 438 73.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Simian retrovirus 4
27234351 27234351 PRJNA485080_P_NODE_27483_length_249_cov_0.875000_g27389_i0 PRJNA485080 27483 249 0.875 2.17875 Gunnison's prairie dog retrovirus 2744145 Viruses Viruses 77 2.09e-14   NR QKU38050.1 2744145 g27389 i0 52.8 1.07228915662651 89 31 100 2 1 249 9 92 QKU38050.1 Pro, partial [Gunnison's prairie dog retrovirus] diamond 267 77 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Gunnison's prairie dog retrovirus
27802985 27802985 PRJNA485080_P_NODE_17104_length_279_cov_0.898058_g17010_i0 PRJNA485080 17104 279 0.898058 2.50558182 Retroviridae sp. 2681591 Viruses Viruses 112 2.48e-26   NR XNT20490.1 2681591 g17010 i0 60.2 0.89247311827957 83 33 89.2 0 30 278 502 584 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 249 112 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
28055294 28055294 PRJNA485080_P_NODE_11045_length_325_cov_1.222222_g10951_i0 PRJNA485080 11045 325 1.222222 3.9722215 Mouse mammary tumor virus 11757 Viruses Viruses 97.1 8.78e-21   NR BAA03767.1 11757 g10951 i0 57.5 7.19076923076923 80 34 73.8 0 47 286 721 800 BAA03767.1 gag pro pol polyprotein, partial [Mouse mammary tumor virus] diamond 2337 97.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
29160796 29160796 PRJNA485080_P_NODE_2829_length_546_cov_1.684989_g2735_i0 PRJNA485080 2829 546 1.684989 9.20003994 Retroviridae sp. 2681591 Viruses Viruses 57.8 4.29e-6   NR XNT20490.1 2681591 g2735 i0 28.9 1.43406593406593 135 82 70.3 2 161 544 366 493 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 783 57.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
29539301 29539301 PRJNA485080_P_NODE_31150_length_247_cov_0.885057_g31056_i0 PRJNA485080 31150 247 0.885057 2.18609079 Golden hamster intracisternal A-particle H18 11752 Viruses Viruses 125 2.3e-31   NR P04026.1 11752 g31056 i0 76.8 0.995951417004049 82 19 99.6 0 247 2 402 483 P04026.1 RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] diamond 246 125 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Golden hamster intracisternal A-particle H18
29839639 29839639 PRJNA485080_P_NODE_11651_length_320_cov_0.821862_g11557_i0 PRJNA485080 11651 320 0.821862 2.6299584 root 1 Root_unresolved Root_unresolved 50.1 2.56e-4   NR P51517.2 39068 g11557 i0 42.6 3.58125 54 31 50.6 0 166 5 1265 1318 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] diamond 1146 50.4 0.994047619047619 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
30644831 30644831 PRJNA485080_P_NODE_15693_length_288_cov_1.074419_g15599_i0 PRJNA485080 15693 288 1.074419 3.09432672 Retroviridae sp. 2681591 Viruses Viruses 71.2 5.97e-12   NR XNT20490.1 2681591 g15599 i0 48 0.78125 75 39 78.1 0 2 226 419 493 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 225 71.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
31150098 31150098 PRJNA485080_P_NODE_14655_length_295_cov_1.527027_g14561_i0 PRJNA485080 14655 295 1.527027 4.50472965 Retroviridae sp. 2681591 Viruses Viruses 79.3 9.67e-15   NR XNT20490.1 2681591 g14561 i0 77.8 0.457627118644068 45 10 45.8 0 135 1 569 613 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 135 79.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
31561849 31561849 PRJNA485080_P_NODE_8036_length_360_cov_0.857143_g7942_i0 PRJNA485080 8036 360 0.857143 3.0857148 Retroviridae sp. 2681591 Viruses Viruses 81.6 3.38e-15   NR XNT20490.1 2681591 g7942 i0 47.9 0.608333333333333 73 38 60.8 0 127 345 309 381 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 219 81.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
32036158 32036158 PRJNA485080_P_NODE_218_length_1465_cov_1.155891_g186_i0 PRJNA485080 218 1465 1.155891 16.93380315 Retroviridae sp. 2681591 Viruses Viruses 169 2.13e-41   NR XNT20490.1 2681591 g186 i0 55 0.327645051194539 160 64 31.1 2 1393 938 462 621 XNT20490.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 480 169 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
32621496 32621496 PRJNA485080_P_NODE_14220_length_299_cov_0.823009_g14126_i0 PRJNA485080 14220 299 0.823009 2.46079691 root 1 Root_unresolved Root_unresolved 97.1 6.180000000000001e-21   NR BAA03767.1 11757 g14126 i0 43.2 6.70234113712375 95 54 95.3 0 3 287 376 470 BAA03767.1 gag pro pol polyprotein, partial [Mouse mammary tumor virus] diamond 2004 97.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;