RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA485080", tax_kingdom = "Orthornavirae" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 3 ✖

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15751927 15751927 PRJNA485080_P_NODE_3513_length_496_cov_585.392435_g3419_i0 PRJNA485080 3513 496 585.392435 2903.5464776 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 117 1.69e-21   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g3419 i0 98.485 2.38306451612903 66 1 20 0 365 430 6 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1182 117 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
17026656 17026656 PRJNA485080_P_NODE_44034_length_219_cov_10.568493_g43940_i0 PRJNA485080 44034 219 10.568493 23.14499967 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 130 8.7e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g43940 i0 100 2.87214611872146 70 0 32 0 149 218 71 2 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 629 130 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
18948898 18948898 PRJNA485080_P_NODE_34775_length_245_cov_0.895349_g34681_i0 PRJNA485080 34775 245 0.895349 2.19360505 Orthorubulavirus 2560195 Viruses Viruses 453 5.1900000000000006e-123   NTclustered gi|1540352612|gb|MK117734.1| 2560580 g34681 i0 100 96.9836734693878 245 0 100 0 1 245 1167 1411 Mammalian orthorubulavirus 5 isolate XJ-WLMQ fusion protein mRNA, complete cds blastn 23761 453 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;