RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA485080", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA485080 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4276063 4276063 PRJNA485080_P_NODE_17764_length_274_cov_1.398010_g17670_i0 PRJNA485080 17764 274 1.39801 3.8305474 Lingula anatina 7574 Brachiopoda other_Eukaryota 52.8 0.025   NTclustered gi|919070557|ref|XM_013561291.1| 7574 g17670 i0 100 0.204379562043796 28 0 10 0 1 28 961 934 PREDICTED: Lingula anatina serine/threonine-protein kinase LATS1 (LOC106178190), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
27534778 27534778 PRJNA485080_P_NODE_20963_length_253_cov_2.011111_g20869_i0 PRJNA485080 20963 253 2.011111 5.08811083 Metazoa 33208 Brachiopoda other_Eukaryota 146 1.3899999999999999e-40   NR XP_013417121.1 7574 g20869 i0 80.7 4.92094861660079 83 16 98.4 0 3 251 37 119 XP_013417121.1 protein arginine N-methyltransferase 1 isoform X1 [Lingula anatina] diamond 1245 146 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30802970 30802970 PRJNA485080_P_NODE_39994_length_242_cov_1.366864_g39900_i0 PRJNA485080 39994 242 1.366864 3.30781088 Lingula anatina 7574 Brachiopoda other_Eukaryota 59.3 5.28e-8   NR XP_013384606.1 7574 g39900 i0 62.5 0.59504132231405 48 15 59.5 1 5 148 625 669 XP_013384606.1 78 kDa glucose-regulated protein [Lingula anatina] diamond 144 59.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;