RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA485080", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29065950 29065950 PRJNA485080_P_NODE_41128_length_242_cov_0.911243_g41034_i0 PRJNA485080 41128 242 0.911243 2.20520806 Anaerolineae bacterium 2052143 Bacteria Bacteria 86.7 1.17e-17   NR MCL6509813.1 2052143 g41034 i0 78 0.731404958677686 59 13 73.1 0 241 65 348 406 MCL6509813.1 P-type conjugative transfer protein TrbL [Anaerolineae bacterium] diamond 177 86.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
29918487 29918487 PRJNA485080_P_NODE_37451_length_244_cov_0.900585_g37357_i0 PRJNA485080 37451 244 0.900585 2.1974274 Herpetosiphonaceae bacterium 2720503 Bacteria Bacteria 42 0.0478   NR HEY1015544.1 2720503 g37357 i0 41 0.75 61 35 73.8 1 191 12 80 140 HEY1015544.1 flavodoxin domain-containing protein [Herpetosiphonaceae bacterium] diamond 183 42 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae   Herpetosiphonaceae bacterium
31909632 31909632 PRJNA485080_P_NODE_18917_length_267_cov_1.190722_g18823_i0 PRJNA485080 18917 267 1.190722 3.17922774 Chloroflexia bacterium 2448782 Bacteria Bacteria 53.1 1.04e-5   NR HET7080889.1 2448782 g18823 i0 39.7 1.74157303370787 73 44 82 0 47 265 377 449 HET7080889.1 FAD-dependent monooxygenase [Chloroflexia bacterium] diamond 465 53.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;