RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA485080", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA485080 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26696361 26696361 PRJNA485080_P_NODE_28981_length_248_cov_0.880000_g28887_i0 PRJNA485080 28981 248 0.88 2.1824 Chlamydia trachomatis 813 Bacteria Bacteria 58.5 3.98e-9   NR CRH27399.1 813 g28887 i0 59.3 0.653225806451613 54 17 59.3 1 1 147 25 78 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 162 58.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
28086886 28086886 PRJNA485080_P_NODE_10665_length_329_cov_0.917969_g10571_i0 PRJNA485080 10665 329 0.917969 3.02011801 Chlamydia trachomatis 813 Bacteria Bacteria 45.8 8.91e-4   NR CRH27399.1 813 g10571 i0 51 0.866261398176292 49 24 44.7 0 152 6 30 78 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 285 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32321272 32321272 PRJNA485080_P_NODE_36039_length_244_cov_0.947368_g35945_i0 PRJNA485080 36039 244 0.947368 2.31157792 Chlamydia trachomatis 813 Bacteria Bacteria 70.5 7.54e-14   NR CRH27399.1 813 g35945 i0 65.5 0.676229508196721 55 19 67.6 0 61 225 25 79 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 165 70.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;