RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA485080", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA485080 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29760283 29760283 PRJNA485080_P_NODE_36711_length_244_cov_0.900585_g36617_i0 PRJNA485080 36711 244 0.900585 2.1974274 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0397   NR MBF0384853.1 2035772 g36617 i0 34.2 0.897540983606557 73 39 86.1 2 7 216 1662 1728 MBF0384853.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 219 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30897925 30897925 PRJNA485080_P_NODE_33954_length_245_cov_1.343023_g33860_i0 PRJNA485080 33954 245 1.343023 3.29040635 Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_ 2035772 Bacteria Bacteria 42.4 0.0448   NR PIQ88852.1 1974746 g33860 i0 37.5 0.391836734693878 32 20 39.2 0 131 226 88 119 PIQ88852.1 MAG: hypothetical protein COV72_06135 [Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_42_13] diamond 96 42.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota       Candidatus Ghiorseimicrobium Candidatus Ghiorseimicrobium undicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;