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contig_metadata

21 rows where bioproject = "PRJNA485080" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 21 ✖

bioproject 1

  • PRJNA485080 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14477712 14477712 PRJNA485080_P_NODE_26772_length_249_cov_0.875000_g26678_i0 PRJNA485080 26772 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 137 6.789999999999999e-37   NR MBC8108210.1 2026778 g26678 i0 78.3 3.96385542168675 83 18 100 0 1 249 234 316 MBC8108210.1 phospho-N-acetylmuramoyl-pentapeptide-transferase [Phycisphaerae bacterium] diamond 987 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
14477810 14477810 PRJNA485080_P_NODE_33072_length_246_cov_0.890173_g32978_i0 PRJNA485080 33072 246 0.890173 2.18982558 Humisphaera borealis 2807512 Bacteria Bacteria 145 7.08e-39   NR WP_206294808.1 2807512 g32978 i0 84.1 4 82 13 100 0 246 1 215 296 WP_206294808.1 hypothetical protein [Humisphaera borealis] diamond 984 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
18300886 18300886 PRJNA485080_P_NODE_36755_length_244_cov_0.900585_g36661_i0 PRJNA485080 36755 244 0.900585 2.1974274 Limnoglobus roseus 2598579 Bacteria Bacteria 329 9.08e-86   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g36661 i0 91.322 127.094262295082 242 19 99 2 1 241 2956909 2957149 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 31011 329 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
20850723 20850723 PRJNA485080_P_NODE_24517_length_250_cov_0.870056_g24423_i0 PRJNA485080 24517 250 0.870056 2.17514 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 84.3 9.62e-17   NR MEX0777320.1 2026777 g24423 i0 57.1 3.996 84 35 99.6 1 250 2 1606 1689 MEX0777320.1 PQQ-dependent sugar dehydrogenase [Phycisphaeraceae bacterium] diamond 999 84.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
26696361 26696361 PRJNA485080_P_NODE_28981_length_248_cov_0.880000_g28887_i0 PRJNA485080 28981 248 0.88 2.1824 Chlamydia trachomatis 813 Bacteria Bacteria 58.5 3.98e-9   NR CRH27399.1 813 g28887 i0 59.3 0.653225806451613 54 17 59.3 1 1 147 25 78 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 162 58.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
27834329 27834329 PRJNA485080_P_NODE_25844_length_249_cov_0.875000_g25750_i0 PRJNA485080 25844 249 0.875 2.17875 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0394   NR MEI6341235.1 2026799 g25750 i0 39.7 0.698795180722892 58 33 67.5 1 44 211 109 166 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 174 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28086886 28086886 PRJNA485080_P_NODE_10665_length_329_cov_0.917969_g10571_i0 PRJNA485080 10665 329 0.917969 3.02011801 Chlamydia trachomatis 813 Bacteria Bacteria 45.8 8.91e-4   NR CRH27399.1 813 g10571 i0 51 0.866261398176292 49 24 44.7 0 152 6 30 78 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 285 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
28118465 28118465 PRJNA485080_P_NODE_18505_length_270_cov_0.928934_g18411_i0 PRJNA485080 18505 270 0.928934 2.5081218 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 43.1 0.0352   NR HET6408581.1 2811408 g18411 i0 42.9 0.466666666666667 42 24 46.7 0 264 139 192 233 HET6408581.1 substrate-binding domain-containing protein [Chthoniobacteraceae bacterium] diamond 126 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
28244693 28244693 PRJNA485080_P_NODE_30386_length_247_cov_0.885057_g30292_i0 PRJNA485080 30386 247 0.885057 2.18609079 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 43.5 0.0216   NR MBR6588306.1 2212473 g30292 i0 35.1 0.692307692307692 57 34 65.6 1 174 13 527 583 MBR6588306.1 hypothetical protein [Kiritimatiellia bacterium] diamond 171 43.5 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28560745 28560745 PRJNA485080_P_NODE_14347_length_298_cov_0.937778_g14253_i0 PRJNA485080 14347 298 0.937778 2.79457844 Lacunisphaera limnophila 1838286 Bacteria Bacteria 46.6 7.41e-4   NR WP_069962458.1 1838286 g14253 i0 39.3 0.563758389261745 56 33 55.4 1 248 84 49 104 WP_069962458.1 gamma-glutamylcyclotransferase family protein [Lacunisphaera limnophila] diamond 168 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
29760283 29760283 PRJNA485080_P_NODE_36711_length_244_cov_0.900585_g36617_i0 PRJNA485080 36711 244 0.900585 2.1974274 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0397   NR MBF0384853.1 2035772 g36617 i0 34.2 0.897540983606557 73 39 86.1 2 7 216 1662 1728 MBF0384853.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 219 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29839640 29839640 PRJNA485080_P_NODE_23751_length_250_cov_0.870056_g23657_i0 PRJNA485080 23751 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 114 7.449999999999998e-30   NR HVK15909.1 1914235 g23657 i0 71.4 3.336 70 20 84 0 211 2 3 72 HVK15909.1 SAM-dependent chlorinase/fluorinase [Fimbriiglobus sp.] diamond 834 114 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus sp.
29949969 29949969 PRJNA485080_P_NODE_26771_length_249_cov_0.875000_g26677_i0 PRJNA485080 26771 249 0.875 2.17875 uncultured Rubinisphaera sp. 1678686 Bacteria Bacteria 45.4 0.00349   NR WP_339743927.1 1678686 g26677 i0 46 1.19277108433735 50 24 60.2 1 213 64 4 50 WP_339743927.1 immunity 26/phosphotriesterase HocA family protein [uncultured Rubinisphaera sp.] diamond 297 45.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Rubinisphaera uncultured Rubinisphaera sp.
30361135 30361135 PRJNA485080_P_NODE_29392_length_248_cov_0.880000_g29298_i0 PRJNA485080 29392 248 0.88 2.1824 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.7 0.00812   NR MBL8726187.1 2026780 g29298 i0 38 0.604838709677419 50 30 60.5 1 23 172 285 333 MBL8726187.1 hypothetical protein [Planctomycetota bacterium] diamond 150 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30897925 30897925 PRJNA485080_P_NODE_33954_length_245_cov_1.343023_g33860_i0 PRJNA485080 33954 245 1.343023 3.29040635 Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_ 2035772 Bacteria Bacteria 42.4 0.0448   NR PIQ88852.1 1974746 g33860 i0 37.5 0.391836734693878 32 20 39.2 0 131 226 88 119 PIQ88852.1 MAG: hypothetical protein COV72_06135 [Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_42_13] diamond 96 42.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota       Candidatus Ghiorseimicrobium Candidatus Ghiorseimicrobium undicola
30992657 30992657 PRJNA485080_P_NODE_37134_length_244_cov_0.900585_g37040_i0 PRJNA485080 37134 244 0.900585 2.1974274 Phycisphaerales bacterium 2052180 Bacteria Bacteria 41.2 0.0427   NR HCD32792.1 2052180 g37040 i0 53.3 0.368852459016393 30 14 36.9 0 216 127 21 50 HCD32792.1 hypothetical protein [Phycisphaerales bacterium] diamond 90 41.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
31340254 31340254 PRJNA485080_P_NODE_25476_length_250_cov_0.864407_g25382_i0 PRJNA485080 25476 250 0.864407 2.1610175 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 133 4.639999999999999e-34   NR MEN9636027.1 2026799 g25382 i0 75.6 0.984 82 20 98.4 0 248 3 675 756 MEN9636027.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 246 133 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31340258 31340258 PRJNA485080_P_NODE_39776_length_243_cov_0.905882_g39682_i0 PRJNA485080 39776 243 0.905882 2.20129326 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.1 0.0266   NR MEM9410775.1 2026780 g39682 i0 37.7 0.753086419753086 61 38 75.3 0 188 6 122 182 MEM9410775.1 STY4199 family HEPN domain-containing protein [Planctomycetota bacterium] diamond 183 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31751343 31751343 PRJNA485080_P_NODE_36337_length_244_cov_0.900585_g36243_i0 PRJNA485080 36337 244 0.900585 2.1974274 Opitutaceae bacterium 2006848 Bacteria Bacteria 42.7 0.0371   NR HLP09157.1 2006848 g36243 i0 31.3 0.786885245901639 64 44 78.7 0 233 42 43 106 HLP09157.1 ABC transporter permease [Opitutaceae bacterium] diamond 192 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31846234 31846234 PRJNA485080_P_NODE_34837_length_245_cov_0.895349_g34743_i0 PRJNA485080 34837 245 0.895349 2.19360505 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0493   NR MDP6361313.1 2026780 g34743 i0 33.9 0.759183673469388 62 35 74.7 2 37 219 83 139 MDP6361313.1 DUF6259 domain-containing protein [Planctomycetota bacterium] diamond 186 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32321272 32321272 PRJNA485080_P_NODE_36039_length_244_cov_0.947368_g35945_i0 PRJNA485080 36039 244 0.947368 2.31157792 Chlamydia trachomatis 813 Bacteria Bacteria 70.5 7.54e-14   NR CRH27399.1 813 g35945 i0 65.5 0.676229508196721 55 19 67.6 0 61 225 25 79 CRH27399.1 Uncharacterised protein [Chlamydia trachomatis] diamond 165 70.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;