RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA484127", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA484127 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14477250 14477250 PRJNA484127_P_NODE_34792_length_247_cov_0.896552_g34643_i0 PRJNA484127 34792 247 0.896552 2.21448344 Bilophila 35832 Bacteria Bacteria 169 3.44e-49   NR MFQ8736378.1 35833 g34643 i0 100 3.98380566801619 82 0 99.6 0 1 246 223 304 MFQ8736378.1 thiamine pyrophosphate-dependent enzyme [Bilophila wadsworthia] diamond 984 169 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia
26918135 26918135 PRJNA484127_P_NODE_38982_length_242_cov_0.923077_g38833_i0 PRJNA484127 38982 242 0.923077 2.23384634 Bilophila wadsworthia 35833 Bacteria Bacteria 168 3.21e-48   NR MFR0874943.1 35833 g38833 i0 100 7.93388429752066 80 0 99.2 0 1 240 144 223 MFR0874943.1 hypothetical protein [Bilophila wadsworthia] diamond 1920 168 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia
32162885 32162885 PRJNA484127_P_NODE_30378_length_252_cov_0.871508_g30229_i0 PRJNA484127 30378 252 0.871508 2.19620016 Desulfovibrio cuneatus 159728 Bacteria Bacteria 159 8.119999999999999e-45   NR WP_027188170.1 159728 g30229 i0 97.6 1 84 2 100 0 252 1 346 429 WP_027188170.1 TrbI/VirB10 family protein [Desulfovibrio cuneatus] diamond 252 159 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio cuneatus
32337271 32337271 PRJNA484127_P_NODE_35199_length_246_cov_0.901734_g35050_i0 PRJNA484127 35199 246 0.901734 2.21826564 Bilophila 35832 Bacteria Bacteria 163 5.3999999999999996e-48   NR WP_009379874.1 35832 g35050 i0 100 5.92682926829268 81 0 98.8 0 244 2 13 93 WP_009379874.1 MULTISPECIES: selenium-dependent molybdenum cofactor biosynthesis protein YqeB [Bilophila] diamond 1458 163 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;