RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA484127" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8101579 8101579 PRJNA484127_P_NODE_24367_length_273_cov_1.560000_g24218_i0 PRJNA484127 24367 273 1.56 4.2588 Monoraphidium neglectum 145388 Plants Plants 231 3e-56   NTclustered gi|926777793|ref|XM_014041917.1| 145388 g24218 i0 85.398 61.9523809523809 226 29 82 3 20 243 242 19 Monoraphidium neglectum heat shock 70kDa protein 1/8 mRNA blastn 16913 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
16399889 16399889 PRJNA484127_P_NODE_37253_length_244_cov_0.912281_g37104_i0 PRJNA484127 37253 244 0.912281 2.22596564 Eukaryota 2759 Plants Plants 58.4 4.73e-4   NTclustered gi|2082241338|ref|XM_043060459.1| 3055 g37104 i0 100 12.4508196721311 31 0 13 0 77 107 5993 5963 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g146567v5), mRNA blastn 3038 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18300415 18300415 PRJNA484127_P_NODE_8515_length_407_cov_2.700599_g8366_i0 PRJNA484127 8515 407 2.700599 10.99143793 Micromonas pusilla 38833 Plants Plants 254 9.98e-63   NTclustered gi|303282132|ref|XM_003060312.1| 564608 g8366 i0 78.68 18.4520884520885 394 74 96 9 1 389 156 544 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_49648), mRNA blastn 7510 254 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
19574373 19574373 PRJNA484127_P_NODE_29776_length_253_cov_0.866667_g29627_i0 PRJNA484127 29776 253 0.866667 2.19266751 Coccomyxa subellipsoidea 248742 Plants Plants 158 4.729999999999999e-34   NTclustered gi|545356038|ref|XM_005643719.1| 574566 g29627 i0 78.125 3.71541501976285 256 50 100 4 1 253 886 1138 Coccomyxa subellipsoidea C-169 nuclear RNA helicase-like protein Bat1 mRNA blastn 940 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19574377 19574377 PRJNA484127_P_NODE_30036_length_253_cov_0.866667_g29887_i0 PRJNA484127 30036 253 0.866667 2.19266751 Pycnococcus provasolii 41880 Plants Plants 140 1.79e-36   NR GHP03157.1 41880 g29887 i0 76.2 1.99209486166008 84 20 99.6 0 253 2 571 654 GHP03157.1 hypothetical protein PPROV_000191200 [Pycnococcus provasolii] diamond 504 140 1 Eukaryota   Viridiplantae Chlorophyta Pseudoscourfieldiophyceae Pseudoscourfieldiales Pycnococcaceae Pycnococcus Pycnococcus provasolii
21499135 21499135 PRJNA484127_P_NODE_30177_length_252_cov_1.743017_g30028_i0 PRJNA484127 30177 252 1.743017 4.39240284 Chlorophyta 3041 Plants Plants 228 3.5399999999999984e-55   NTclustered gi|255085001|ref|XM_002504886.1| 296587 g30028 i0 84.034 84.7698412698413 238 36 94 2 6 242 529 765 Micromonas commoda predicted protein mRNA blastn 21362 228 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
26601155 26601155 PRJNA484127_P_NODE_10881_length_370_cov_2.572391_g10732_i0 PRJNA484127 10881 370 2.572391 9.5178467 Helicosporidium sp. ATCC 5 1907511 Plants Plants 151 8.59e-44   NR KDD76381.1 1291522 g10732 i0 65.4 1.71081081081081 104 36 84.3 0 2 313 74 177 KDD76381.1 hypothetical protein H632_c248p2 [Helicosporidium sp. ATCC 50920] diamond 633 151 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
30361115 30361115 PRJNA484127_P_NODE_13392_length_342_cov_2.074349_g13243_i0 PRJNA484127 13392 342 2.074349 7.09427358 Cymbomonas tetramitiformis 36881 Plants Plants 111 1.82e-27   NR KAK3281978.1 36881 g13243 i0 58.5 0.929824561403509 106 39 90.4 2 32 340 101 204 KAK3281978.1 protein kinase domain-containing protein [Cymbomonas tetramitiformis] diamond 318 111 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
30408646 30408646 PRJNA484127_P_NODE_40473_length_227_cov_2.025974_g40324_i0 PRJNA484127 40473 227 2.025974 4.59896098 Eukaryota 2759 Plants Plants 70.5 4.74e-13   NR KAK9804915.1 41462 g40324 i0 64.2 2.8942731277533 53 19 70 0 2 160 101 153 KAK9804915.1 hypothetical protein WJX72_011827 [[Myrmecia] bisecta] diamond 657 70.9 0.994358251057828 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
30914027 30914027 PRJNA484127_P_NODE_30434_length_252_cov_0.871508_g30285_i0 PRJNA484127 30434 252 0.871508 2.19620016 root 1 Root_unresolved Root_unresolved 50.4 7.67e-5   NR KAF5830871.1 3046 g30285 i0 38.6 10.4761904761905 70 41 83.3 1 243 34 92 159 KAF5830871.1 hypothetical protein DUNSADRAFT_13931 [Dunaliella salina] diamond 2640 50.8 0.992125984251969 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
31261482 31261482 PRJNA484127_P_NODE_25795_length_267_cov_1.567010_g25646_i0 PRJNA484127 25795 267 1.56701 4.1839167 Chlorellaceae 35461 Plants Plants 91.7 3.09e-19   NR KAK2078008.1 3111 g25646 i0 54 4.8876404494382 87 37 97.8 1 267 7 123 206 KAK2078008.1 T-complex protein 1 subunit eta [Prototheca wickerhamii] diamond 1305 92 0.996739130434783 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
31276847 31276847 PRJNA484127_P_NODE_21795_length_285_cov_1.669811_g21646_i0 PRJNA484127 21795 285 1.669811 4.75896135 Auxenochlorella protothecoides 3075 Plants Plants 45.1 0.00938   NR XP_011400040.1 3075 g21646 i0 45.3 1.11578947368421 53 28 55.8 1 119 277 16 67 XP_011400040.1 Phospholipase B-like 1 [Auxenochlorella protothecoides] diamond 318 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
31925633 31925633 PRJNA484127_P_NODE_18417_length_304_cov_1.800866_g18268_i0 PRJNA484127 18417 304 1.800866 5.47463264 Eukaryota 2759 Plants Plants 85.9 4.89e-17   NR GHP12233.1 41880 g18268 i0 45.8 3.76973684210526 96 51 94.7 1 1 288 269 363 GHP12233.1 hypothetical protein PPROV_001096100 [Pycnococcus provasolii] diamond 1146 86.3 0.995365005793743 Eukaryota   Viridiplantae Chlorophyta Pseudoscourfieldiophyceae Pseudoscourfieldiales Pycnococcaceae Pycnococcus Pycnococcus provasolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;