RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA484127" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11927341 11927341 PRJNA484127_P_NODE_36450_length_245_cov_0.906977_g36301_i0 PRJNA484127 36450 245 0.906977 2.22209365 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 110 1.37e-26   NR KNE64014.1 578462 g36301 i0 66.7 3.66122448979592 75 25 91.8 0 15 239 178 252 KNE64014.1 GTP-binding protein YchF [Allomyces macrogynus ATCC 38327] diamond 897 110 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
14477325 14477325 PRJNA484127_P_NODE_39072_length_242_cov_0.923077_g38923_i0 PRJNA484127 39072 242 0.923077 2.23384634 Paraphysoderma sedebokerense 1500003 Fungi Fungi 145 2.2e-39   NR KAI9140081.1 1500003 g38923 i0 86.3 5.9504132231405 80 11 99.2 0 242 3 319 398 KAI9140081.1 cytoplasmic serine-tRNA ligase Srs1 [Paraphysoderma sedebokerense] diamond 1440 145 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;