RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA484127", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24674826 24674826 PRJNA484127_P_NODE_5060_length_506_cov_0.822171_g4913_i0 PRJNA484127 5060 506 0.822171 4.16018526 Bacteria 2 Bacteria Bacteria 210 1.55e-62   NR MCL2833488.1 166 g4913 i0 77.3 18.3438735177866 128 29 75.9 0 384 1 3 130 MCL2833488.1 NADP-dependent malic enzyme [Treponema sp.] diamond 9282 211 0.995260663507109 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
30314075 30314075 PRJNA484127_P_NODE_34392_length_247_cov_0.896552_g34243_i0 PRJNA484127 34392 247 0.896552 2.21448344 Pseudomonadati 3379134 Bacteria Bacteria 102 5.2499999999999996e-23   NR MBQ7367444.1 1898206 g34243 i0 59.3 4.89473684210526 81 33 98.4 0 245 3 848 928 MBQ7367444.1 class I SAM-dependent DNA methyltransferase [Spirochaetaceae bacterium] diamond 1209 102 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;