RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA484127", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29065923 29065923 PRJNA484127_P_NODE_21468_length_287_cov_1.355140_g21319_i0 PRJNA484127 21468 287 1.35514 3.8892518 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.17e-15   NR CEO98730.1 37360 g21319 i0 50 0.878048780487805 84 38 87.8 2 35 286 1 80 CEO98730.1 hypothetical protein PBRA_006844 [Plasmodiophora brassicae] diamond 252 78.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29192202 29192202 PRJNA484127_P_NODE_25529_length_268_cov_1.600000_g25380_i0 PRJNA484127 25529 268 1.6 4.288 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 95.5 1.23e-20   NR SPQ93309.1 37360 g25380 i0 64.2 0.75 67 24 75 0 3 203 460 526 SPQ93309.1 unnamed protein product [Plasmodiophora brassicae] diamond 201 95.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;