RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA484127", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA484127 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1723028 1723028 PRJNA484127_P_NODE_13642_length_340_cov_1.164794_g13493_i0 PRJNA484127 13642 340 1.164794 3.9602996 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 108 1.71e-25   NR CDW80281.1 5949 g13493 i0 48.1 7.47352941176471 106 54 93.5 1 3 320 226 330 CDW80281.1 UNKNOWN [Stylonychia lemnae] diamond 2541 109 0.990825688073395 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
17025939 17025939 PRJNA484127_P_NODE_35174_length_246_cov_0.919075_g35025_i0 PRJNA484127 35174 246 0.919075 2.2609245 Lamtostyla sp. LPJ-2005 331616 SAR_Eukaryotes SAR_Eukaryotes 226 1.2399999999999997e-54   NTclustered gi|67462297|gb|DQ062090.1| 331616 g35025 i0 83.817 86.9390243902439 241 35 97 4 4 242 443 205 Lamtostyla sp. LPJ-2005 heta shock protein 70 mRNA, partial cds; macronuclear blastn 21387 226 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Amphisiellidae Lamtostyla Lamtostyla sp. LPJ-2005
32415998 32415998 PRJNA484127_P_NODE_34339_length_247_cov_0.896552_g34190_i0 PRJNA484127 34339 247 0.896552 2.21448344 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 64.7 7.52e-10   NR CAI2383647.1 5936 g34190 i0 47.4 0.947368421052632 78 34 86.2 1 246 34 5696 5773 CAI2383647.1 unnamed protein product [Moneuplotes crassus] diamond 234 64.7 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;