RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where bioproject = "PRJNA484127" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 32 ✖

bioproject 1

  • PRJNA484127 · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1723028 1723028 PRJNA484127_P_NODE_13642_length_340_cov_1.164794_g13493_i0 PRJNA484127 13642 340 1.164794 3.9602996 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 108 1.71e-25   NR CDW80281.1 5949 g13493 i0 48.1 7.47352941176471 106 54 93.5 1 3 320 226 330 CDW80281.1 UNKNOWN [Stylonychia lemnae] diamond 2541 109 0.990825688073395 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
2999285 2999285 PRJNA484127_P_NODE_27203_length_261_cov_6.771277_g27054_i0 PRJNA484127 27203 261 6.771277 17.67303297 Kryptoperidinium triquetrum 66468 SAR_Eukaryotes SAR_Eukaryotes 289 1.67e-73   NTclustered gi|157011456|gb|EF640328.1| 66468 g27054 i0 86.59 97.6551724137931 261 35 100 0 1 261 295 555 Heterocapsa triquetra strain CCMP448 actin (Act1) mRNA, partial cds blastn 25488 289 1 Eukaryota Sar     Dinophyceae Peridiniales Kryptoperidiniaceae Kryptoperidinium Kryptoperidinium triquetrum
4275378 4275378 PRJNA484127_P_NODE_16784_length_314_cov_2.879668_g16635_i0 PRJNA484127 16784 314 2.879668 9.04215752 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 486 6.7999999999999986e-133   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g16635 i0 94.207 21.9012738853503 328 4 100 7 1 314 847 1173 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 6877 486 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
10652089 10652089 PRJNA484127_P_NODE_17749_length_308_cov_1.595745_g17600_i0 PRJNA484127 17749 308 1.595745 4.9148946 Rosculus vulgaris 2231165 SAR_Eukaryotes SAR_Eukaryotes 224 5.759999999999999e-54   NTclustered gi|1402550474|gb|MH488760.1| 2231165 g17600 i0 80.511 9.71753246753247 313 44 100 13 1 308 2860 2560 Rosculus vulgaris isolate CCA sequence blastn 2993 224 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus vulgaris
13202153 13202153 PRJNA484127_P_NODE_2651_length_666_cov_4.981450_g2509_i0 PRJNA484127 2651 666 4.98145 33.176457 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 1230 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g2509 i0 100 37.6111111111111 666 0 100 0 1 666 2111 1446 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 25049 1230 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
13202475 13202475 PRJNA484127_P_NODE_8691_length_404_cov_1.870091_g8542_i0 PRJNA484127 8691 404 1.870091 7.55516764 Aureococcus anophagefferens 44056 SAR_Eukaryotes SAR_Eukaryotes 180 1.7e-40   NTclustered gi|676397092|ref|XM_009043576.1| 44056 g8542 i0 79.842 6.27970297029703 253 45 62 6 19 268 362 113 Aureococcus anophagefferens 60S ribosomal protein mRNA blastn 2537 180 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens
14477166 14477166 PRJNA484127_P_NODE_29392_length_253_cov_3.922222_g29243_i0 PRJNA484127 29392 253 3.922222 9.92322166 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 468 1.92e-127   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g29243 i0 100 19.6916996047431 253 0 100 0 1 253 1421 1169 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 4982 468 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
14477389 14477389 PRJNA484127_P_NODE_6272_length_462_cov_4.151671_g6124_i0 PRJNA484127 6272 462 4.151671 19.18072002 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 854 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g6124 i0 100 14.3549783549784 462 0 100 0 1 462 33 494 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 6632 854 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
17025589 17025589 PRJNA484127_P_NODE_14134_length_335_cov_1.767176_g13985_i0 PRJNA484127 14134 335 1.767176 5.9200396 Pfiesteria piscicida 71001 SAR_Eukaryotes SAR_Eukaryotes 257 6.24e-64   NTclustered gi|112253201|gb|DQ864772.1| 71001 g13985 i0 81.613 93.1402985074627 310 57 93 0 8 317 195 504 Pfiesteria piscicida clone ppi-5p-3-3 mRNA sequence blastn 31202 257 1 Eukaryota Sar     Dinophyceae Peridiniales Pfiesteriaceae Pfiesteria Pfiesteria piscicida
17025939 17025939 PRJNA484127_P_NODE_35174_length_246_cov_0.919075_g35025_i0 PRJNA484127 35174 246 0.919075 2.2609245 Lamtostyla sp. LPJ-2005 331616 SAR_Eukaryotes SAR_Eukaryotes 226 1.2399999999999997e-54   NTclustered gi|67462297|gb|DQ062090.1| 331616 g35025 i0 83.817 86.9390243902439 241 35 97 4 4 242 443 205 Lamtostyla sp. LPJ-2005 heta shock protein 70 mRNA, partial cds; macronuclear blastn 21387 226 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Amphisiellidae Lamtostyla Lamtostyla sp. LPJ-2005
17025988 17025988 PRJNA484127_P_NODE_38314_length_242_cov_2.579882_g38165_i0 PRJNA484127 38314 242 2.579882 6.24331444 root 1 Root_unresolved Root_unresolved 122 1.93e-30   NR XP_067925722.1 483139 g38165 i0 77.5 10.6487603305785 71 16 88 0 215 3 102 172 XP_067925722.1 isocitrate dehydrogenase [Cystoisospora suis] diamond 2577 123 0.991869918699187 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
18299845 18299845 PRJNA484127_P_NODE_13135_length_345_cov_1.033088_g12986_i0 PRJNA484127 13135 345 1.033088 3.5641536 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.95e-4   NTclustered gi|915139498|ref|XM_013481713.1| 5804 g12986 i0 100 0.0927536231884058 32 0 9 0 114 145 1456 1487 Eimeria maxima leucine rich repeat family protein, putative partial mRNA blastn 32 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
19574269 19574269 PRJNA484127_P_NODE_24256_length_274_cov_1.044776_g24107_i0 PRJNA484127 24256 274 1.044776 2.86268624 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|698803785|ref|XM_009836620.1| 112090 g24107 i0 96.774 0.113138686131387 31 1 11 0 242 272 963 993 Aphanomyces astaci hypothetical protein mRNA blastn 31 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25323599 25323599 PRJNA484127_P_NODE_9640_length_388_cov_2.161905_g9491_i0 PRJNA484127 9640 388 2.161905 8.3881914 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 178 5.86e-40   NTclustered gi|2795037459|ref|XM_067927134.1| 4785 g9491 i0 77.931 59.4046391752577 290 60 74 4 49 336 321 34 Phytophthora cinnamomi 60S ribosomal protein L22 (IUM83_03150), partial mRNA blastn 23049 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
26839476 26839476 PRJNA484127_P_NODE_11741_length_360_cov_1.358885_g11592_i0 PRJNA484127 11741 360 1.358885 4.891986 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 66.6 2.76e-10   NR KAJ8578052.1 4785 g11592 i0 53.3 1.325 60 28 50 0 3 182 177 236 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 477 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
27455693 27455693 PRJNA484127_P_NODE_18183_length_305_cov_2.379310_g18034_i0 PRJNA484127 18183 305 2.37931 7.2568955 Blastocystis sp. subtype 4 944170 SAR_Eukaryotes SAR_Eukaryotes 61.6 1.75e-8   NR XP_014527687.1 944170 g18034 i0 50.9 0.99344262295082 55 27 54.1 0 212 48 155 209 XP_014527687.1 high mobility group b protein 6-like protein [Blastocystis sp. subtype 4] diamond 303 61.6 1 Eukaryota Sar     Bigyra Opalinata Blastocystidae Blastocystis Blastocystis sp. subtype 4
27598068 27598068 PRJNA484127_P_NODE_7504_length_429_cov_1.095506_g7356_i0 PRJNA484127 7504 429 1.095506 4.69972074 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 123 6.78e-31   NR KAL3788302.1 29204 g7356 i0 49.3 4.99300699300699 142 66 99.3 3 427 2 166 301 KAL3788302.1 hypothetical protein HJC23_002876 [Cyclotella cryptica] diamond 2142 123 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
27629634 27629634 PRJNA484127_P_NODE_34104_length_247_cov_1.793103_g33955_i0 PRJNA484127 34104 247 1.793103 4.42896441 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 91.3 1.26e-20   NR XP_002259675.1 5851 g33955 i0 53.7 34.8097165991903 82 37 99.6 1 246 1 19 99 XP_002259675.1 ras-related protein Rab-1A, putative [Plasmodium knowlesi strain H] diamond 8598 91.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi
28055291 28055291 PRJNA484127_P_NODE_7165_length_437_cov_1.211538_g7017_i0 PRJNA484127 7165 437 1.211538 5.29442106 Blastocystis sp. Blastoise 3128533 SAR_Eukaryotes SAR_Eukaryotes 130 1.09e-34   NR KAK8790990.1 3128533 g7017 i0 51.2 0.88558352402746 129 63 88.6 0 392 6 81 209 KAK8790990.1 hypothetical protein WA158_005621 [Blastocystis sp. Blastoise] diamond 387 130 1 Eukaryota Sar     Bigyra Opalinata Blastocystidae Blastocystis Blastocystis sp. Blastoise
28292379 28292379 PRJNA484127_P_NODE_16306_length_318_cov_1.273469_g16157_i0 PRJNA484127 16306 318 1.273469 4.04963142 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 3.38e-34   NR TMW63526.1 41045 g16157 i0 61.9 12.7830188679245 105 40 99.1 0 2 316 302 406 TMW63526.1 hypothetical protein Poli38472_002467 [Pythium oligandrum] diamond 4065 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29065923 29065923 PRJNA484127_P_NODE_21468_length_287_cov_1.355140_g21319_i0 PRJNA484127 21468 287 1.35514 3.8892518 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.17e-15   NR CEO98730.1 37360 g21319 i0 50 0.878048780487805 84 38 87.8 2 35 286 1 80 CEO98730.1 hypothetical protein PBRA_006844 [Plasmodiophora brassicae] diamond 252 78.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29065934 29065934 PRJNA484127_P_NODE_36868_length_244_cov_0.912281_g36719_i0 PRJNA484127 36868 244 0.912281 2.22596564 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 52 2.15e-5   NR OQR97629.1 1202772 g36719 i0 61.1 0.442622950819672 36 14 44.3 0 122 229 272 307 OQR97629.1 N-acetylglucosamine-1-phosphotransferase subunits alpha/beta [Achlya hypogyna] diamond 108 52 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
29113548 29113548 PRJNA484127_P_NODE_30528_length_252_cov_0.871508_g30379_i0 PRJNA484127 30528 252 0.871508 2.19620016 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 127 1.5499999999999998e-35   NR XP_013228494.1 5802 g30379 i0 77.8 3.85714285714286 81 18 96.4 0 245 3 1 81 XP_013228494.1 40S ribosomal protein S18, putative [Eimeria tenella] diamond 972 128 0.9921875 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
29192202 29192202 PRJNA484127_P_NODE_25529_length_268_cov_1.600000_g25380_i0 PRJNA484127 25529 268 1.6 4.288 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 95.5 1.23e-20   NR SPQ93309.1 37360 g25380 i0 64.2 0.75 67 24 75 0 3 203 460 526 SPQ93309.1 unnamed protein product [Plasmodiophora brassicae] diamond 201 95.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29254986 29254986 PRJNA484127_P_NODE_28849_length_255_cov_4.313187_g28700_i0 PRJNA484127 28849 255 4.313187 10.99862685 Symbiodinium natans 878477 SAR_Eukaryotes SAR_Eukaryotes 51.6 3.09e-5   NR CAE7481866.1 878477 g28700 i0 54.2 0.564705882352941 48 22 56.5 0 239 96 51 98 CAE7481866.1 unnamed protein product [Symbiodinium natans] diamond 144 51.6 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium natans
29318299 29318299 PRJNA484127_P_NODE_23229_length_278_cov_1.687805_g23080_i0 PRJNA484127 23229 278 1.687805 4.6920979 Vitrella brassicaformis CCMP3155 1169540 SAR_Eukaryotes SAR_Eukaryotes 89.7 1.1e-18   NR CEL92077.1 1169540 g23080 i0 58.2 1.65107913669065 79 30 82 2 49 276 248 326 CEL92077.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 459 89.7 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
29966071 29966071 PRJNA484127_P_NODE_29751_length_253_cov_0.866667_g29602_i0 PRJNA484127 29751 253 0.866667 2.19266751 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.6 5.47e-7   NR KAF0694440.1 120398 g29602 i0 37.5 3.699604743083 80 48 94.9 1 250 11 304 381 KAF0694440.1 hypothetical protein As57867_014640 [Aphanomyces stellatus] diamond 936 57 0.992982456140351 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30139094 30139094 PRJNA484127_P_NODE_3972_length_561_cov_1.739754_g3827_i0 PRJNA484127 3972 561 1.739754 9.76001994 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 70.9 5.29e-11   NR MES1907185.1 1215613 g3827 i0 64 0.572192513368984 50 18 26.7 0 54 203 1 50 MES1907185.1 hypothetical protein [Cercozoa sp. M6MM] diamond 321 70.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30992632 30992632 PRJNA484127_P_NODE_29394_length_253_cov_3.577778_g29245_i0 PRJNA484127 29394 253 3.577778 9.05177834 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 68.2 3e-12   NR CCA27654.1 890382 g29245 i0 57.9 2.62055335968379 57 20 62.8 1 161 3 69 125 CCA27654.1 hypothetical protein ALNC14_137980 [Albugo laibachii Nc14] diamond 663 68.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
31356485 31356485 PRJNA484127_P_NODE_34476_length_247_cov_0.896552_g34327_i0 PRJNA484127 34476 247 0.896552 2.21448344 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 94.4 6.65e-21   NR XP_012650249.1 1133968 g34327 i0 59.5 2.72064777327935 74 23 81.4 1 242 42 248 321 XP_012650249.1 guanine nucleotide-binding protein subunit beta-2-like 1 protein [Babesia microti strain RI] diamond 672 94.7 0.996832101372756 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
31388140 31388140 PRJNA484127_P_NODE_35696_length_246_cov_0.901734_g35547_i0 PRJNA484127 35696 246 0.901734 2.21826564 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 67.4 7.94e-11   NR CEM33325.1 1169540 g35547 i0 48.8 3.89024390243902 80 39 95.1 1 245 12 619 698 CEM33325.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 957 67.4 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
32415998 32415998 PRJNA484127_P_NODE_34339_length_247_cov_0.896552_g34190_i0 PRJNA484127 34339 247 0.896552 2.21448344 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 64.7 7.52e-10   NR CAI2383647.1 5936 g34190 i0 47.4 0.947368421052632 78 34 86.2 1 246 34 5696 5773 CAI2383647.1 unnamed protein product [Moneuplotes crassus] diamond 234 64.7 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;