RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA484127" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA484127 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4275627 4275627 PRJNA484127_P_NODE_29584_length_253_cov_1.361111_g29435_i0 PRJNA484127 29584 253 1.361111 3.44361083 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 237 5.899999999999999e-58   NTclustered gi|551539306|ref|XM_005758086.1| 280463 g29435 i0 83.665 92.9762845849802 251 41 99 0 1 251 303 553 Emiliania huxleyi CCMP1516 receptor of activated protein kinase C partial mRNA blastn 23523 237 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
32210521 32210521 PRJNA484127_P_NODE_6818_length_446_cov_2.061662_g6670_i0 PRJNA484127 6818 446 2.061662 9.19501252 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 2.45e-33   NR XP_005771275.1 280463 g6670 i0 62.6 2.32735426008969 115 40 77.4 1 346 2 9 120 XP_005771275.1 hypothetical protein EMIHUDRAFT_413872 [Emiliania huxleyi CCMP1516] diamond 1038 131 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
32699853 32699853 PRJNA484127_P_NODE_32680_length_249_cov_0.886364_g32531_i0 PRJNA484127 32680 249 0.886364 2.20704636 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 100 1.34e-22   NR KOO29646.1 1460289 g32531 i0 70.1 0.807228915662651 67 19 80.7 1 202 2 21 86 KOO29646.1 endosomal p24a protein [Chrysochromulina tobinii] diamond 201 100 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;