RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA484127", tax_clade = "Bacteria candidate phyla" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14477292 14477292 PRJNA484127_P_NODE_37432_length_243_cov_2.647059_g37283_i0 PRJNA484127 37432 243 2.647059 6.43235337 Patescibacteria group bacterium 2052139 Bacteria Bacteria 121 1.25e-30   NR MBU1446128.1 2052139 g37283 i0 77 1.82716049382716 74 17 91.4 0 3 224 359 432 MBU1446128.1 adenosylhomocysteinase [Patescibacteria group bacterium] diamond 444 121 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
27218557 27218557 PRJNA484127_P_NODE_37582_length_243_cov_1.611765_g37433_i0 PRJNA484127 37582 243 1.611765 3.91658895 Bacteria 2 Bacteria Bacteria 109 9.17e-26   NR KKU46096.1 1618532 g37433 i0 61.3 11.8888888888889 80 27 98.8 1 243 4 262 337 KKU46096.1 MAG: Ribonucleoside-diphosphate reductase, partial [Microgenomates group bacterium GW2011_GWC2_46_7] diamond 2889 109 1 Bacteria Bacteria candidate phyla             Microgenomates group bacterium GW2011_GWC2_46_7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;