RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA484127", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA484127 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15125231 15125231 PRJNA484127_P_NODE_11272_length_365_cov_1.869863_g11123_i0 PRJNA484127 11272 365 1.869863 6.82499995 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 198 8.43e-59   NR XP_004344078.1 1257118 g11123 i0 76.9 0.994520547945206 121 28 99.5 0 364 2 55 175 XP_004344078.1 Sadenosyl-L-homocysteine hydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 363 198 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27424173 27424173 PRJNA484127_P_NODE_28223_length_258_cov_1.394595_g28074_i0 PRJNA484127 28223 258 1.394595 3.5980551 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.1 2.04e-6   NR XP_004356620.1 1257118 g28074 i0 37.5 1.83720930232558 80 39 93 2 244 5 791 859 XP_004356620.1 myosin IC heavy chain, putative [Acanthamoeba castellanii str. Neff] diamond 474 55.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;