RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA482207" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA482207 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29871273 29871273 PRJNA482207_P_NODE_3851_length_485_cov_0.847087_g3741_i0 PRJNA482207 3851 485 0.847087 4.10837195 root 1 Root_unresolved Root_unresolved 135 2.22e-33   NR VZI47949.1 99802 g3741 i0 41.9 17.9567010309278 160 91 98.4 2 477 1 471 629 VZI47949.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 8709 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
32495379 32495379 PRJNA482207_P_NODE_20839_length_250_cov_0.870056_g20729_i0 PRJNA482207 20839 250 0.870056 2.17514 Metazoa 33208 Platyhelminthes Platyhelminthes 67.4 8.56e-11   NR CAH8627353.1 6187 g20729 i0 45.6 11.364 79 37 92.4 3 17 247 3 77 CAH8627353.1 unnamed protein product [Schistosoma intercalatum] diamond 2841 67.8 0.994100294985251 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma intercalatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;