RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA482207" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA482207 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27076267 27076267 PRJNA482207_P_NODE_16342_length_273_cov_1.815000_g16232_i0 PRJNA482207 16342 273 1.815 4.95495 Helicobacter pylori 210 Bacteria Bacteria 145 1.7499999999999996e-43   NR GAA8683247.1 210 g16232 i0 97.6 0.912087912087912 83 2 91.2 0 3 251 3 85 GAA8683247.1 hypothetical protein Kyoto145A_0510 [Helicobacter pylori] diamond 249 145 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27123672 27123672 PRJNA482207_P_NODE_9482_length_335_cov_2.087786_g9372_i0 PRJNA482207 9482 335 2.087786 6.9940831 root 1 Root_unresolved Root_unresolved 105 7.480000000000001e-27   NR WP_238408432.1 210 g9372 i0 75.3 5.22985074626866 73 18 65.4 0 305 87 30 102 WP_238408432.1 DUF1398 family protein, partial [Helicobacter pylori] diamond 1752 105 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30123787 30123787 PRJNA482207_P_NODE_25212_length_246_cov_0.890173_g25102_i0 PRJNA482207 25212 246 0.890173 2.18982558 Pseudomonadati 3379134 Bacteria Bacteria 50.8 1.04e-5   NR HFU74927.1 1872629 g25102 i0 88 0.902439024390244 25 3 30.5 0 4 78 97 121 HFU74927.1 VOC family protein [Arcobacter sp.] diamond 222 51.2 0.9921875 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.
32527174 32527174 PRJNA482207_P_NODE_20539_length_250_cov_0.870056_g20429_i0 PRJNA482207 20539 250 0.870056 2.17514 Arcobacteraceae 2808963 Bacteria Bacteria 129 8.01e-36   NR MCP4971261.1 1872629 g20429 i0 70.4 3.96 81 24 97.2 0 250 8 72 152 MCP4971261.1 hypothetical protein [Arcobacter sp.] diamond 990 129 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;