RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA482207", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA482207 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15750611 15750611 PRJNA482207_P_NODE_20493_length_250_cov_0.870056_g20383_i0 PRJNA482207 20493 250 0.870056 2.17514 Desulfuromonas sp. 892 Bacteria Bacteria 58.2 1.43e-7   NR PLY01841.1 892 g20383 i0 48.1 1.944 81 35 97.2 1 245 3 404 477 PLY01841.1 MAG: ATP-binding protein [Desulfuromonas sp.] diamond 486 58.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
26918102 26918102 PRJNA482207_P_NODE_17342_length_266_cov_0.984456_g17232_i0 PRJNA482207 17342 266 0.984456 2.61865296 Pseudodesulfovibrio sp. 2035812 Bacteria Bacteria 42.4 0.0343   NR MBI9078288.1 2035812 g17232 i0 33.8 0.902255639097744 80 50 89.1 2 260 24 15 92 MBI9078288.1 metal-dependent hydrolase [Pseudodesulfovibrio sp.] diamond 240 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp.
27265994 27265994 PRJNA482207_P_NODE_29103_length_242_cov_0.911243_g28993_i0 PRJNA482207 29103 242 0.911243 2.20520806 Desulfobacterales bacterium 2044940 Bacteria Bacteria 81.6 6.36e-16   NR MBF0398578.1 2044940 g28993 i0 50.6 3 81 39 99.2 1 242 3 339 419 MBF0398578.1 transporter substrate-binding domain-containing protein [Desulfobacterales bacterium] diamond 726 81.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
31134700 31134700 PRJNA482207_P_NODE_14455_length_288_cov_1.432558_g14345_i0 PRJNA482207 14455 288 1.432558 4.12576704 Bilophila 35832 Bacteria Bacteria 65.1 9.36e-10   NR WP_417023345.1 35833 g14345 i0 36.8 4.41666666666667 106 53 97.9 3 7 288 455 558 WP_417023345.1 SNF2-related protein, partial [Bilophila wadsworthia] diamond 1272 65.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;