RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA482207", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA482207 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28560711 28560711 PRJNA482207_P_NODE_23747_length_247_cov_0.885057_g23637_i0 PRJNA482207 23747 247 0.885057 2.18609079 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 82.8 3e-16   NR NQY99173.1 2053517 g23637 i0 52.1 1.71255060728745 71 34 86.2 0 214 2 265 335 NQY99173.1 response regulator [Bdellovibrionales bacterium] diamond 423 82.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32495380 32495380 PRJNA482207_P_NODE_24399_length_247_cov_0.885057_g24289_i0 PRJNA482207 24399 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 103 1.88e-23   NR MBK7362141.1 2024841 g24289 i0 61.5 4.74898785425101 78 30 94.7 0 239 6 385 462 MBK7362141.1 hypothetical protein [Micavibrio sp.] diamond 1173 103 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;