RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA482207", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA482207 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31435032 31435032 PRJNA482207_P_NODE_25916_length_245_cov_0.895349_g25806_i0 PRJNA482207 25916 245 0.895349 2.19360505 Synchytrium endobioticum 286115 Fungi Fungi 66.6 1.49e-10   NR TPX43522.1 286115 g25806 i0 48.4 1.49387755102041 62 32 75.9 0 20 205 922 983 TPX43522.1 hypothetical protein SeLEV6574_g05013 [Synchytrium endobioticum] diamond 366 66.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
32036123 32036123 PRJNA482207_P_NODE_21538_length_249_cov_0.875000_g21428_i0 PRJNA482207 21538 249 0.875 2.17875 Nowakowskiella sp. JEL 2012159 Fungi Fungi 48.9 2.33e-4   NR KAJ3117946.1 2732418 g21428 i0 54.1 0.91566265060241 37 17 44.6 0 206 96 63 99 KAJ3117946.1 hypothetical protein HK098_006075 [Nowakowskiella sp. JEL0407] diamond 228 48.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JEL0407

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;