RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA482207", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA482207 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26949606 26949606 PRJNA482207_P_NODE_27882_length_243_cov_0.905882_g27772_i0 PRJNA482207 27882 243 0.905882 2.20129326 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 112 2.0099999999999999e-28   NR PIK45367.1 307972 g27772 i0 65 3.95061728395062 80 28 98.8 0 2 241 40 119 PIK45367.1 reverse transcriptase [Apostichopus japonicus] diamond 960 112 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
28687146 28687146 PRJNA482207_P_NODE_10927_length_320_cov_0.708502_g10817_i0 PRJNA482207 10927 320 0.708502 2.2672064 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 54.3 8.05e-6   NR PIK57359.1 307972 g10817 i0 31.1 0.69375 74 51 69.4 0 222 1 112 185 PIK57359.1 putative zinc finger protein [Apostichopus japonicus] diamond 222 54.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
29602190 29602190 PRJNA482207_P_NODE_15090_length_283_cov_0.990476_g14980_i0 PRJNA482207 15090 283 0.990476 2.80304708 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 49.7 1.4e-4   NR KAJ8023179.1 206669 g14980 i0 49.1 0.583038869257951 55 27 58.3 1 168 4 69 122 KAJ8023179.1 hypothetical protein HOLleu_38284 [Holothuria leucospilota] diamond 165 49.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;