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contig_metadata

11 rows where bioproject = "PRJNA478247" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
447830 447830 PRJNA478247_P_NODE_281_length_931_cov_19.780488_g124_i2 PRJNA478247 281 931 19.780488 184.15634328 Copromyxa protea 931554 Tubulinea other_Eukaryota 737 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g124 i2 81.579 7.17615467239527 912 151 97 15 4 902 908 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 6681 737 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
4274750 4274750 PRJNA478247_P_NODE_424_length_714_cov_15.537226_g190_i3 PRJNA478247 424 714 15.537226 110.93579364 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 843 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g190 i3 88.352 95.1232492997199 704 78 98 4 13 714 1149 448 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 67918 843 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
5551422 5551422 PRJNA478247_P_NODE_685_length_514_cov_9.577320_g580_i0 PRJNA478247 685 514 9.57732 49.2274248 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 580 5.19e-161   NTclustered gi|17897590|emb|AJ314605.1| 160820 g580 i0 87.072 59.0622568093385 526 52 100 13 1 514 1779 1258 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 30358 580 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
9375579 9375579 PRJNA478247_P_NODE_168_length_1158_cov_18.891940_g124_i0 PRJNA478247 168 1158 18.89194 218.7686652 Copromyxa protea 931554 Tubulinea other_Eukaryota 909 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g124 i0 81.868 2.44905008635579 1103 179 94 16 71 1158 1385 289 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2836 909 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
9375581 9375581 PRJNA478247_P_NODE_248_length_993_cov_13.726141_g190_i0 PRJNA478247 248 993 13.726141 136.30058013 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 848 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g190 i0 88.494 78.2839879154078 704 77 97 4 1 702 448 1149 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 77736 848 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
13201396 13201396 PRJNA478247_P_NODE_291_length_899_cov_19.770115_g124_i3 PRJNA478247 291 899 19.770115 177.73333385 Copromyxa protea 931554 Tubulinea other_Eukaryota 710 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g124 i3 81.078 3.29477196885428 909 155 99 15 4 899 908 4 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2962 710 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18299343 18299343 PRJNA478247_P_NODE_175_length_1144_cov_18.513004_g124_i1 PRJNA478247 175 1144 18.513004 211.78876576 Copromyxa protea 931554 Tubulinea other_Eukaryota 887 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g124 i1 81.545 2.45979020979021 1100 182 95 19 60 1144 1382 289 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2814 887 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
24673870 24673870 PRJNA478247_P_NODE_600_length_569_cov_2.479630_g497_i0 PRJNA478247 600 569 2.47963 14.1090947 Amoeba proteus 5775 Tubulinea other_Eukaryota 296 4.15e-100   NR AAW58116.1 5775 g497 i0 80.2 0.880492091388401 167 33 88 0 502 2 1 167 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 501 296 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27613518 27613518 PRJNA478247_P_NODE_1604_length_290_cov_2.172414_g1498_i0 PRJNA478247 1604 290 2.172414 6.3000006 Amoeba proteus 5775 Tubulinea other_Eukaryota 155 3.77e-43   NR AAD37351.1 5775 g1498 i0 75.3 0.962068965517241 93 23 96.2 0 10 288 90 182 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 279 155 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27960668 27960668 PRJNA478247_P_NODE_825_length_459_cov_2.586047_g720_i0 PRJNA478247 825 459 2.586047 11.86995573 Amoeba proteus 5775 Tubulinea other_Eukaryota 104 3.33e-23   NR AAD37351.1 5775 g720 i0 81.3 0.418300653594771 64 12 41.8 0 266 457 6 69 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 192 104 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32888709 32888709 PRJNA478247_P_NODE_2160_length_232_cov_1.487685_g2054_i0 PRJNA478247 2160 232 1.487685 3.4514292 Amoeba proteus 5775 Tubulinea other_Eukaryota 127 5.34e-33   NR AAP88974.1 5775 g2054 i0 77.6 0.982758620689655 76 17 98.3 0 230 3 180 255 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 228 127 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;