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contig_metadata

18 rows where bioproject = "PRJNA478247" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA478247 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22774132 22774132 PRJNA478247_P_NODE_3458_length_157_cov_1.148438_g3352_i0 PRJNA478247 3458 157 1.148438 1.80304766 Phallusia mammillata 59560 Chordata Chordata 100 2.919999999999999e-23   NR CAB3263465.1 59560 g3352 i0 88.5 0.993630573248408 52 6 99.4 0 156 1 309 360 CAB3263465.1 adenosylhomocysteinase [Phallusia mammillata] diamond 156 100 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
24673865 24673865 PRJNA478247_P_NODE_3460_length_156_cov_4.535433_g3354_i0 PRJNA478247 3460 156 4.535433 7.07527548 Tinamus guttatus 94827 Chordata Chordata 176 7.31e-40   NTclustered gi|719743150|ref|XM_010212026.1| 94827 g3354 i0 93.277 73.1025641025641 119 8 76 0 38 156 70 188 PREDICTED: Tinamus guttatus eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA blastn 11404 176 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
26601144 26601144 PRJNA478247_P_NODE_321_length_855_cov_2.675545_g246_i0 PRJNA478247 321 855 2.675545 22.87590975 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 371 1.18e-125   NR CAI9170285.1 3082113 g246 i0 64.8 1.95789473684211 281 75 93 5 10 804 4 276 CAI9170285.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 1674 371 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
26934151 26934151 PRJNA478247_P_NODE_2942_length_181_cov_2.197368_g2836_i0 PRJNA478247 2942 181 2.197368 3.97723608 Metazoa 33208 Chordata Chordata 40 0.0316   NR XP_007883268.1 7868 g2836 i0 77.3 1.0939226519337 22 5 36.5 0 115 180 16 37 XP_007883268.1 histone H2A-like [Callorhinchus milii] diamond 198 40.4 0.99009900990099 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
27076262 27076262 PRJNA478247_P_NODE_1722_length_275_cov_2.849593_g1616_i0 PRJNA478247 1722 275 2.849593 7.83638075 Lagopus muta 64668 Chordata Chordata 44.3 0.0148   NR XP_048789181.1 64668 g1616 i0 49.4 0.883636363636364 81 33 80.7 3 8 229 34 113 XP_048789181.1 uncharacterized protein LOC125687893 isoform X1 [Lagopus muta] diamond 243 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Lagopus Lagopus muta
28008523 28008523 PRJNA478247_P_NODE_2045_length_243_cov_2.046729_g1939_i0 PRJNA478247 2045 243 2.046729 4.97355147 Metazoa 33208 Chordata Chordata 60.1 1.14e-8   NR XP_035658935.1 7739 g1939 i0 55.2 3.30864197530864 67 19 82.7 2 43 243 1 56 XP_035658935.1 40S ribosomal protein S8-like [Branchiostoma floridae] diamond 804 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28134797 28134797 PRJNA478247_P_NODE_2265_length_224_cov_2.143590_g2159_i0 PRJNA478247 2265 224 2.14359 4.8016416 Aves 8782 Chordata Chordata 87 4.28e-18   NR NWH26725.1 9117 g2159 i0 61.3 13.0178571428571 75 28 99.1 1 2 223 135 209 NWH26725.1 PEPA protein [Grus americana] diamond 2916 87 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus americana
28387187 28387187 PRJNA478247_P_NODE_1786_length_268_cov_1.635983_g1680_i0 PRJNA478247 1786 268 1.635983 4.38443444 Anura 8342 Chordata Chordata 86.7 1.75e-17   NR NP_001087675.1 8355 g1680 i0 54.2 9.59328358208955 72 33 80.6 0 217 2 213 284 NP_001087675.1 annexin A7 S homeolog [Xenopus laevis] diamond 2571 86.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29397596 29397596 PRJNA478247_P_NODE_1949_length_251_cov_1.684685_g1843_i0 PRJNA478247 1949 251 1.684685 4.22855935 Metazoa 33208 Chordata Chordata 90.5 6.980000000000001e-21   NR PIO16379.1 8400 g1843 i0 53.7 14.4980079681275 82 35 98 2 3 248 21 99 PIO16379.1 hypothetical protein AB205_0001690, partial [Aquarana catesbeiana] diamond 3639 91.3 0.991237677984666 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
29934590 29934590 PRJNA478247_P_NODE_3331_length_161_cov_2.128788_g3225_i0 PRJNA478247 3331 161 2.128788 3.42734868 Gymnophiona 8445 Chordata Chordata 42 0.00214   NR XP_029463224.1 194408 g3225 i0 63.4 2.04968944099379 41 13 72.7 1 119 3 1 41 XP_029463224.1 thymosin beta-15B [Rhinatrema bivittatum] diamond 330 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
29997741 29997741 PRJNA478247_P_NODE_1431_length_315_cov_5.933566_g1325_i0 PRJNA478247 1431 315 5.933566 18.6907329 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 143 5.659999999999998e-42   NR XP_031797815.1 9305 g1325 i0 78.2 48.6761904761905 87 18 81.9 1 12 269 12 98 XP_031797815.1 40S ribosomal protein S27 isoform X2 [Sarcophilus harrisii] diamond 15333 143 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dasyuromorphia Dasyuridae Sarcophilus Sarcophilus harrisii
29997743 29997743 PRJNA478247_P_NODE_491_length_643_cov_5.659609_g396_i0 PRJNA478247 491 643 5.659609 36.39128587 Metazoa 33208 Chordata Chordata 246 3.33e-79   NR XP_035660024.1 7739 g396 i0 69.4 15.6951788491446 170 52 79.3 0 577 68 39 208 XP_035660024.1 60S ribosomal protein L11 isoform X1 [Branchiostoma floridae] diamond 10092 247 0.995951417004049 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30076154 30076154 PRJNA478247_P_NODE_2952_length_180_cov_2.264901_g2846_i0 PRJNA478247 2952 180 2.264901 4.0768218 Muntiacus muntjak 9888 Chordata Chordata 50.4 2.45e-5   NR KAB0351856.1 9888 g2846 i0 55.3 3.8 38 17 63.3 0 6 119 181 218 KAB0351856.1 hypothetical protein FD754_016713 [Muntiacus muntjak] diamond 684 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
30739743 30739743 PRJNA478247_P_NODE_2174_length_231_cov_1.811881_g2068_i0 PRJNA478247 2174 231 1.811881 4.18544511 Styela clava 7725 Chordata Chordata 67.8 4.72e-11   NR XP_039263216.1 7725 g2068 i0 43.2 0.961038961038961 74 41 94.8 1 230 12 44 117 XP_039263216.1 uncharacterized protein LOC120339198 [Styela clava] diamond 222 67.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
31087331 31087331 PRJNA478247_P_NODE_335_length_836_cov_4.946716_g258_i0 PRJNA478247 335 836 4.946716 41.35454576 Narcine bancroftii 1343680 Chordata Chordata 249 3.25e-78   NR XP_069787765.1 1343680 g258 i0 56.2 18.8217703349282 235 98 82.5 2 119 808 68 302 XP_069787765.1 large ribosomal subunit protein eL8 [Narcine bancroftii] diamond 15735 249 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
31577818 31577818 PRJNA478247_P_NODE_1136_length_373_cov_2.447674_g1030_i0 PRJNA478247 1136 373 2.447674 9.12982402 Opisthokonta 33154 Chordata Chordata 81.3 5.14e-15   NR XP_028677543.1 27687 g1030 i0 41.7 6.28954423592493 103 54 78.8 2 349 56 5 106 XP_028677543.1 tripeptidyl-peptidase 1 [Erpetoichthys calabaricus] diamond 2346 81.6 0.996323529411765 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32257993 32257993 PRJNA478247_P_NODE_2898_length_184_cov_1.651613_g2792_i0 PRJNA478247 2898 184 1.651613 3.03896792 Clavelina lepadiformis 159417 Chordata Chordata 43.9 0.00666   NR CAK8692237.1 159417 g2792 i0 37.1 2.05434782608696 62 35 97.8 3 1 180 53 112 CAK8692237.1 unnamed protein product [Clavelina lepadiformis] diamond 378 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
32511094 32511094 PRJNA478247_P_NODE_619_length_557_cov_2.660985_g515_i0 PRJNA478247 619 557 2.660985 14.82168645 Clavelina lepadiformis 159417 Chordata Chordata 186 7.22e-51   NR CAK8689709.1 159417 g515 i0 60 0.99640933572711 185 74 99.6 0 557 3 596 780 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 555 186 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;