RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA478247" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA478247 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22124227 22124227 PRJNA478247_P_NODE_2638_length_200_cov_1.719298_g2532_i0 PRJNA478247 2638 200 1.719298 3.438596 Bacteria 2 Bacteria Bacteria 124 9.599999999999999e-32   NR ANM29890.1 1660251 g2532 i0 81.8 12.87 66 12 99 0 198 1 350 415 ANM29890.1 type I citrate synthase [Acidobacteria bacterium Mor1] diamond 2574 125 0.992 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1
28560706 28560706 PRJNA478247_P_NODE_547_length_609_cov_6.720690_g449_i0 PRJNA478247 547 609 6.72069 40.9290021 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 50.1 0.00267   NR HJZ80335.1 2283092 g449 i0 35.2 0.61576354679803 125 61 60.1 6 581 216 108 215 HJZ80335.1 Calx-beta domain-containing protein [Pyrinomonadaceae bacterium] diamond 375 50.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30834549 30834549 PRJNA478247_P_NODE_3194_length_167_cov_2.434783_g3088_i0 PRJNA478247 3194 167 2.434783 4.06608761 Blastocatellia bacterium 2052146 Bacteria Bacteria 95.5 9.21e-22   NR MBL8151210.1 2052146 g3088 i0 70.9 3.95209580838323 55 16 98.8 0 2 166 254 308 MBL8151210.1 phosphoenolpyruvate carboxykinase (GTP) [Blastocatellia bacterium] diamond 660 95.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;