RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA478247", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4274752 4274752 PRJNA478247_P_NODE_824_length_459_cov_2.667442_g719_i0 PRJNA478247 824 459 2.667442 12.24355878 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 266 2.46e-83   NR VDK59621.1 6269 g719 i0 86.3 65 153 21 100 0 459 1 87 239 VDK59621.1 unnamed protein product [Anisakis simplex] diamond 29835 266 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
27455674 27455674 PRJNA478247_P_NODE_1123_length_377_cov_1.870690_g1017_i0 PRJNA478247 1123 377 1.87069 7.0525013 Soboliphyme baturini 241478 Nematoda Nematoda 183 5.62e-57   NR VDP44206.1 241478 g1017 i0 78.5 5.76127320954907 121 26 96.3 0 366 4 26 146 VDP44206.1 unnamed protein product [Soboliphyme baturini] diamond 2172 183 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
27865805 27865805 PRJNA478247_P_NODE_1205_length_356_cov_2.143731_g1099_i0 PRJNA478247 1205 356 2.143731 7.63168236 Steinernema carpocapsae 34508 Nematoda Nematoda 82.4 3.74e-17   NR TKR92981.1 34508 g1099 i0 52.2 2.53651685393258 92 39 76.7 2 82 354 3 90 TKR92981.1 hypothetical protein L596_007523 [Steinernema carpocapsae] diamond 903 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;