RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA478247", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30518602 30518602 PRJNA478247_P_NODE_373_length_782_cov_3.074369_g289_i0 PRJNA478247 373 782 3.074369 24.04156558 Lingula anatina 7574 Brachiopoda other_Eukaryota 100 1.09e-20   NR XP_013403613.1 7574 g289 i0 30.6 0.966751918158568 252 143 94 10 780 46 63 289 XP_013403613.1 putative ascorbate peroxidase [Lingula anatina] diamond 756 100 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31719785 31719785 PRJNA478247_P_NODE_517_length_630_cov_1.682196_g420_i0 PRJNA478247 517 630 1.682196 10.5978348 Lingula anatina 7574 Brachiopoda other_Eukaryota 82 1.43e-14   NR XP_013412191.1 7574 g420 i0 33.5 1.71428571428571 179 96 79.5 9 16 516 92 259 XP_013412191.1 putative ascorbate peroxidase [Lingula anatina] diamond 1080 82 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31877786 31877786 PRJNA478247_P_NODE_1117_length_378_cov_2.040115_g1011_i0 PRJNA478247 1117 378 2.040115 7.7116347 Lingula anatina 7574 Brachiopoda other_Eukaryota 58.9 2.97e-7   NR XP_013408446.1 7574 g1011 i0 52.3 1.57142857142857 44 21 34.9 0 163 32 50 93 XP_013408446.1 putative ascorbate peroxidase [Lingula anatina] diamond 594 58.9 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;