RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA478247", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA478247 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26727661 26727661 PRJNA478247_P_NODE_1361_length_329_cov_1.596667_g1255_i0 PRJNA478247 1361 329 1.596667 5.25303443 Chloroflexota bacterium 2026724 Bacteria Bacteria 60.8 5.48e-9   NR MCX6065193.1 2026724 g1255 i0 37.1 0.638297872340426 70 44 63.8 0 214 5 52 121 MCX6065193.1 protease inhibitor I42 family protein [Chloroflexota bacterium] diamond 210 60.8 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29760251 29760251 PRJNA478247_P_NODE_591_length_573_cov_3.397059_g488_i0 PRJNA478247 591 573 3.397059 19.46514807 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 48.5 0.00134   NR HEU0073941.1 2026734 g488 i0 47.9 0.25130890052356 48 24 25.1 1 182 325 56 102 HEU0073941.1 RlpA-like double-psi beta-barrel domain-containing protein [Dehalococcoidia bacterium] diamond 144 48.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30297913 30297913 PRJNA478247_P_NODE_2612_length_202_cov_1.826590_g2506_i0 PRJNA478247 2612 202 1.82659 3.6897118 Chloroflexales bacterium 2725990 Bacteria Bacteria 135 3.92e-35   NR MCG8347618.1 2725990 g2506 i0 88.1 5.94059405940594 67 8 99.5 0 1 201 47 113 MCG8347618.1 phosphoenolpyruvate carboxykinase (GTP) [Chloroflexales bacterium] diamond 1200 135 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales     Chloroflexales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;