RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA478247", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551412 5551412 PRJNA478247_P_NODE_1565_length_295_cov_3.067669_g1459_i0 PRJNA478247 1565 295 3.067669 9.04962355 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 154 1.3599999999999999e-46   NR CEP03007.1 37360 g1459 i0 81.1 39.7830508474576 90 17 91.5 0 291 22 1 90 CEP03007.1 hypothetical protein PBRA_009225 [Plasmodiophora brassicae] diamond 11736 154 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28623923 28623923 PRJNA478247_P_NODE_667_length_530_cov_2.940120_g562_i0 PRJNA478247 667 530 2.94012 15.582636 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 171 7.61e-51   NR CEO99768.1 37360 g562 i0 55.6 1.79433962264151 162 65 88.3 2 508 41 1 161 CEO99768.1 hypothetical protein PBRA_007502 [Plasmodiophora brassicae] diamond 951 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;