RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA478247", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA478247 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9375577 9375577 PRJNA478247_P_NODE_1148_length_370_cov_1.715543_g1042_i0 PRJNA478247 1148 370 1.715543 6.3475091 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 180 2.56e-51   NR XP_002184983.1 556484 g1042 i0 71.1 9.71351351351351 121 35 98.1 0 368 6 414 534 XP_002184983.1 transport protein Sec61 alpha subunit [Phaeodactylum tricornutum CCAP 1055/1] diamond 3594 181 0.994475138121547 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23400031 23400031 PRJNA478247_P_NODE_3099_length_172_cov_2.510490_g2993_i0 PRJNA478247 3099 172 2.51049 4.3180428 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 102 1.4599999999999999e-24   NR AAX09600.1 29204 g2993 i0 85.7 1.95348837209302 56 8 97.7 0 3 170 254 309 AAX09600.1 elongation factor 1 alpha, partial [Cyclotella cryptica] diamond 336 102 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
28482002 28482002 PRJNA478247_P_NODE_1206_length_356_cov_1.862385_g1100_i0 PRJNA478247 1206 356 1.862385 6.6300906 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 57.8 8.43e-8   NR CAJ1953280.1 2856 g1100 i0 71.1 2.55337078651685 38 11 32 0 253 140 69 106 CAJ1953280.1 unnamed protein product [Cylindrotheca closterium] diamond 909 58.2 0.993127147766323 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
29350003 29350003 PRJNA478247_P_NODE_2589_length_203_cov_2.206897_g2483_i0 PRJNA478247 2589 203 2.206897 4.48000091 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 91.3 1.8e-19   NR KAL3780445.1 29204 g2483 i0 65.2 2.92610837438424 66 23 97.5 0 2 199 4060 4125 KAL3780445.1 hypothetical protein HJC23_010355 [Cyclotella cryptica] diamond 594 91.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;