RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA478247" and tax_clade = "Metamonada"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA478247 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21498998 21498998 PRJNA478247_P_NODE_1197_length_358_cov_1.775076_g1091_i0 PRJNA478247 1197 358 1.775076 6.35477208 Monocercomonoides 302781 Preaxostyla other_Eukaryota 320 8.42e-83   NTclustered gi|156708125|gb|EF474120.1| 302782 g1091 i0 83.918 79.5223463687151 342 47 94 5 15 350 1381 1042 Monocercomonoides sp. PA clone 1/4 tubulin alpha subunit mRNA, complete cds blastn 28469 320 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides sp. PA
27645145 27645145 PRJNA478247_P_NODE_264_length_961_cov_4.124464_g201_i0 PRJNA478247 264 961 4.124464 39.63609904 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 53.9 5.83e-4   NR KAJ3449419.1 1746091 g201 i0 42.5 0.490114464099896 73 40 22.2 2 59 271 1 73 KAJ3449419.1 ovarian carcinoma antigen [Anaeramoeba flamelloides] diamond 471 53.9 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31150064 31150064 PRJNA478247_P_NODE_495_length_642_cov_4.528548_g400_i0 PRJNA478247 495 642 4.528548 29.07327816 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 135 9.87e-33   NR KAJ5071081.1 1746090 g400 i0 36.1 1.66355140186916 180 107 83.6 3 606 70 22 194 KAJ5071081.1 hypothetical protein M0811_10565 [Anaeramoeba ignava] diamond 1068 135 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;