RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA474911" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474911 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
447684 447684 PRJNA474911_P_NODE_8161_length_202_cov_0.907801_g8034_i0 PRJNA474911 8161 202 0.907801 1.83375802 Globomyces pollinis-pini 382532 Fungi Fungi 107 7.74e-26   NR KAI8898306.1 382532 g8034 i0 74.2 3.92079207920792 66 17 98 0 199 2 219 284 KAI8898306.1 phospho-2-dehydro-3-deoxyheptonate aldolase [Globomyces pollinis-pini] diamond 792 107 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
16399641 16399641 PRJNA474911_P_NODE_1733_length_481_cov_3.616667_g1609_i0 PRJNA474911 1733 481 3.616667 17.39616827 Nowakowskiella 109880 Fungi Fungi 143 2.7e-29   NTclustered gi|194241380|gb|EU828507.1| 546781 g1609 i0 96.552 16.9209979209979 87 2 18 1 395 481 308 223 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 8139 143 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR
24048991 24048991 PRJNA474911_P_NODE_6419_length_219_cov_3.253165_g6292_i0 PRJNA474911 6419 219 3.253165 7.12443135 Fungi 4751 Fungi Fungi 99 2.45e-16   NTclustered gi|1866582454|gb|MT730629.1| 109894 g6292 i0 98.214 25.7123287671233 56 1 26 0 2 57 4780 4725 Geranomyces variabilis isolate Barr350 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5631 100 0.99 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
26854997 26854997 PRJNA474911_P_NODE_4341_length_279_cov_1.536697_g4214_i0 PRJNA474911 4341 279 1.536697 4.28738463 Neocallimastix frontalis 4757 Fungi Fungi 137 1.7999999999999998e-36   NR P42894.1 4757 g4214 i0 72 3.95698924731183 93 26 100 0 279 1 206 298 P42894.1 RecName: Full=Enolase; AltName: Full=2-phospho-D-glycerate hydro-lyase; AltName: Full=2-phosphoglycerate dehydratase [Neocallimastix frontalis] diamond 1104 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
28907629 28907629 PRJNA474911_P_NODE_8128_length_202_cov_0.907801_g8001_i0 PRJNA474911 8128 202 0.907801 1.83375802 Rhizophlyctis rosea 64517 Fungi Fungi 82.8 1.71e-16   NR KAJ3043804.1 64517 g8001 i0 56.7 1.9752475247524801 67 29 99.5 0 201 1 1863 1929 KAJ3043804.1 Protein RRP5 [Rhizophlyctis rosea] diamond 399 82.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
29397595 29397595 PRJNA474911_P_NODE_6449_length_219_cov_1.215190_g6322_i0 PRJNA474911 6449 219 1.21519 2.6612661 root 1 Root_unresolved Root_unresolved 114 4.65e-29   NR KAI9027894.1 82268 g6322 i0 82.1 10.3150684931507 67 12 91.8 0 215 15 178 244 KAI9027894.1 40S ribosomal protein S2 [Hyaloraphidium curvatum] diamond 2259 115 0.991304347826087 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
30581581 30581581 PRJNA474911_P_NODE_7493_length_206_cov_0.882759_g7366_i0 PRJNA474911 7493 206 0.882759 1.81848354 Gaertneriomyces semiglobifer 109897 Fungi Fungi 42 0.0426   NR KAI8998237.1 109897 g7366 i0 36.1 1.04854368932039 72 41 97.6 2 5 205 174 245 KAI8998237.1 hypothetical protein BC832DRAFT_623328 [Gaertneriomyces semiglobifer] diamond 216 42 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
31403637 31403637 PRJNA474911_P_NODE_4456_length_275_cov_1.196262_g4329_i0 PRJNA474911 4456 275 1.196262 3.2897205 Lobulomycetales sp. 2058121 Fungi Fungi 91.7 3.48e-19   NR KAL3896030.1 2058121 g4329 i0 61.5 0.992727272727273 91 35 99.3 0 3 275 577 667 KAL3896030.1 MAG: hypothetical protein SGCHY_004340 [Lobulomycetales sp.] diamond 273 91.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
31704239 31704239 PRJNA474911_P_NODE_7777_length_204_cov_0.895105_g7650_i0 PRJNA474911 7777 204 0.895105 1.8260142 Opisthokonta 33154 Fungi Fungi 85.9 1.27e-17   NR KAJ3160661.1 1134077 g7650 i0 69.4 4.55882352941176 62 19 91.2 0 3 188 154 215 KAJ3160661.1 hypothetical protein HDU86_000420 [Geranomyces michiganensis] diamond 930 85.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces michiganensis
31909594 31909594 PRJNA474911_P_NODE_8077_length_202_cov_1.113475_g7950_i0 PRJNA474911 8077 202 1.113475 2.2492195 Gonapodya sp. JEL 2107737 Fungi Fungi 42 0.0416   NR KAJ3336358.1 2725673 g7950 i0 40.7 0.801980198019802 54 22 65.3 1 71 202 100 153 KAJ3336358.1 hypothetical protein HDU93_003029 [Gonapodya sp. JEL0774] diamond 162 42 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya sp. JEL0774

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;