contig_metadata
26 rows where bioproject = "PRJNA474911", tax_kingdom = "Bacillati" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2372563 | 2372563 | PRJNA474911_P_NODE_4422_length_276_cov_2.093023_g4295_i0 | PRJNA474911 | 4422 | 276 | 2.093023 | 5.77674348 | Staphylococcus | 1279 | Bacteria | Bacteria | 510 | 3.48e-140 | NTclustered | gi|1373834432|emb|LT963440.1| | 29382 | g4295 | i0 | 100 | 497.003623188406 | 276 | 0 | 100 | 0 | 1 | 276 | 2166337 | 2166612 | Staphylococcus cohnii isolate Staphylococcus cohnii ATCC 29974 genome assembly, chromosome: I | blastn | 137173 | 510 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus cohnii | ||
| 4274600 | 4274600 | PRJNA474911_P_NODE_4704_length_265_cov_1.911765_g4577_i0 | PRJNA474911 | 4704 | 265 | 1.911765 | 5.06617725 | Staphylococcus hominis | 1290 | Bacteria | Bacteria | 483 | 7.249999999999998e-132 | NTclustered | gi|1854288993|gb|CP054550.1| | 1290 | g4577 | i0 | 99.621 | 448.316981132075 | 264 | 1 | 99 | 0 | 2 | 265 | 1094342 | 1094079 | Staphylococcus hominis strain FDAARGOS_661 chromosome, complete genome | blastn | 118804 | 483 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 4925210 | 4925210 | PRJNA474911_P_NODE_4584_length_270_cov_1.531100_g4457_i0 | PRJNA474911 | 4584 | 270 | 1.5311 | 4.13397 | Bacillota | 1239 | Bacteria | Bacteria | 499 | 7.349999999999998e-137 | NTclustered | gi|2722736583|dbj|AP031486.1| | 1260 | g4457 | i0 | 100 | 102.988888888889 | 270 | 0 | 100 | 0 | 1 | 270 | 632031 | 631762 | Finegoldia magna NBRC 113804 DNA, complete genome: sequence1 | blastn | 27807 | 499 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Finegoldia | Finegoldia magna | ||
| 4925224 | 4925224 | PRJNA474911_P_NODE_7424_length_206_cov_1.579310_g7297_i0 | PRJNA474911 | 7424 | 206 | 1.57931 | 3.2533786 | Gemella | 1378 | Bacteria | Bacteria | 381 | 2.0199999999999994e-101 | NTclustered | gi|1540173839|emb|LR134484.1| | 1379 | g7297 | i0 | 100 | 905.902912621359 | 206 | 0 | 100 | 0 | 1 | 206 | 10307 | 10512 | Gemella haemolysans strain NCTC10459 genome assembly, chromosome: 1 | blastn | 186616 | 381 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Gemellaceae | Gemella | Gemella haemolysans | ||
| 6200196 | 6200196 | PRJNA474911_P_NODE_3945_length_297_cov_1.084746_g3818_i0 | PRJNA474911 | 3945 | 297 | 1.084746 | 3.22169562 | Latilactobacillus | 2767885 | Bacteria | Bacteria | 545 | 1.04e-150 | NTclustered | gi|1031621101|gb|KU317787.1| | 1599 | g3818 | i0 | 99.663 | 169.986531986532 | 297 | 1 | 100 | 0 | 1 | 297 | 326 | 30 | Lactobacillus sakei strain HC2 16S ribosomal RNA gene, partial sequence | blastn | 50486 | 545 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Latilactobacillus | Latilactobacillus sakei | ||
| 6200200 | 6200200 | PRJNA474911_P_NODE_5925_length_231_cov_1.223529_g5798_i0 | PRJNA474911 | 5925 | 231 | 1.223529 | 2.82635199 | Streptococcus | 1301 | Bacteria | Bacteria | 422 | 1.37e-113 | NTclustered | gi|2890261556|gb|CP177179.1| | 1304 | g5798 | i0 | 99.567 | 558.125541125541 | 231 | 1 | 100 | 0 | 1 | 231 | 17595 | 17365 | Streptococcus salivarius strain MRD-NRLLH chromosome, complete genome | blastn | 128927 | 422 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus salivarius | ||
| 7475065 | 7475065 | PRJNA474911_P_NODE_2326_length_406_cov_1.527536_g2200_i0 | PRJNA474911 | 2326 | 406 | 1.527536 | 6.20179616 | Finegoldia | 150022 | Bacteria | Bacteria | 745 | 0 | NTclustered | gi|2127667581|gb|CP085957.1| | 1260 | g2200 | i0 | 99.754 | 379.85960591133 | 406 | 1 | 100 | 0 | 1 | 406 | 164170 | 163765 | Finegoldia magna strain FDAARGOS_1556 chromosome, complete genome | blastn | 154223 | 745 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Finegoldia | Finegoldia magna | ||
| 8100723 | 8100723 | PRJNA474911_P_NODE_8067_length_202_cov_1.361702_g7940_i0 | PRJNA474911 | 8067 | 202 | 1.361702 | 2.75063804 | Streptococcus sp. D7B5 | 3038077 | Bacteria | Bacteria | 285 | 1.59e-72 | NTclustered | gi|2484075149|gb|CP121467.1| | 3038077 | g7940 | i0 | 92.118 | 8.76732673267327 | 203 | 14 | 100 | 2 | 1 | 202 | 1177012 | 1177213 | Streptococcus sp. D7B5 chromosome, complete genome | blastn | 1771 | 285 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus sp. D7B5 | ||
| 8750027 | 8750027 | PRJNA474911_P_NODE_6387_length_220_cov_2.012579_g6260_i0 | PRJNA474911 | 6387 | 220 | 2.012579 | 4.4276738 | Gemella | 1378 | Bacteria | Bacteria | 407 | 3.61e-109 | NTclustered | gi|158147915|emb|AM779079.1| | 1379 | g6260 | i0 | 100 | 106 | 220 | 0 | 100 | 0 | 1 | 220 | 227 | 8 | Gemella haemolysans partial 16S rRNA gene, strain F15 | blastn | 23320 | 407 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Gemellaceae | Gemella | Gemella haemolysans | ||
| 10651327 | 10651327 | PRJNA474911_P_NODE_8029_length_202_cov_3.531915_g7902_i0 | PRJNA474911 | 8029 | 202 | 3.531915 | 7.1344683 | Macrococcus sp. 21M1142 | 3395467 | Bacteria | Bacteria | 141 | 3.65e-29 | NTclustered | gi|2899131459|gb|CP179724.1| | 3395469 | g7902 | i0 | 80.423 | 179.668316831683 | 189 | 33 | 92 | 4 | 1 | 186 | 1823773 | 1823586 | Macrococcus sp. 21M1142 chromosome, complete genome | blastn | 36293 | 141 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Macrococcus | Macrococcus sp. 21M1142 | ||
| 12576045 | 12576045 | PRJNA474911_P_NODE_3550_length_316_cov_2.313725_g3424_i0 | PRJNA474911 | 3550 | 316 | 2.313725 | 7.311371 | Veillonella | 29465 | Bacteria | Bacteria | 573 | 5.109999999999998e-159 | NTclustered | gi|1835309918|emb|LR778174.1| | 29466 | g3424 | i0 | 99.367 | 494.721518987342 | 316 | 2 | 100 | 0 | 1 | 316 | 96938 | 96623 | Veillonella parvula strain SKV38 genome assembly, chromosome: 1 | blastn | 156332 | 573 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella parvula | ||
| 12576049 | 12576049 | PRJNA474911_P_NODE_4710_length_265_cov_1.598039_g4583_i0 | PRJNA474911 | 4710 | 265 | 1.598039 | 4.23480335 | Lactobacillales | 186826 | Bacteria | Bacteria | 267 | 7.949999999999999e-67 | NTclustered | gi|2889339564|gb|CP177124.1| | 2739 | g4583 | i0 | 96.296 | 379.249056603774 | 162 | 6 | 61 | 0 | 104 | 265 | 580706 | 580867 | Vagococcus salmoninarum strain 2022-01 chromosome, complete genome | blastn | 100501 | 267 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Vagococcus | Vagococcus salmoninarum | ||
| 13850695 | 13850695 | PRJNA474911_P_NODE_3071_length_345_cov_1.679577_g2945_i0 | PRJNA474911 | 3071 | 345 | 1.679577 | 5.79454065 | Veillonella | 29465 | Bacteria | Bacteria | 638 | 1.97e-178 | NTclustered | gi|1540028531|emb|LR134375.1| | 39778 | g2945 | i0 | 100 | 266.773913043478 | 345 | 0 | 100 | 0 | 1 | 345 | 80363 | 80707 | Veillonella dispar strain NCTC11831 genome assembly, chromosome: 1 | blastn | 92037 | 638 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella dispar | ||
| 18299190 | 18299190 | PRJNA474911_P_NODE_5555_length_239_cov_2.056180_g5428_i0 | PRJNA474911 | 5555 | 239 | 2.05618 | 4.9142702 | Clostridium thermarum | 1716543 | Bacteria | Bacteria | 337 | 5.299999999999998e-88 | NTclustered | gi|1685740129|gb|CP040924.1| | 1716543 | g5428 | i0 | 92.083 | 991.083682008368 | 240 | 18 | 100 | 1 | 1 | 239 | 156924 | 157163 | Clostridium thermarum strain SYSU GA15002 chromosome, complete genome | blastn | 236869 | 337 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium thermarum | ||
| 18299202 | 18299202 | PRJNA474911_P_NODE_8135_length_202_cov_0.907801_g8008_i0 | PRJNA474911 | 8135 | 202 | 0.907801 | 1.83375802 | Staphylococcus hominis | 1290 | Bacteria | Bacteria | 368 | 1.54e-97 | NTclustered | gi|1373834430|emb|LT963438.1| | 1290 | g8008 | i0 | 99.505 | 91.4356435643564 | 202 | 1 | 100 | 0 | 1 | 202 | 2210104 | 2209903 | Staphylococcus hominis isolate Staphylococcus hominis J11 genome assembly, chromosome: I | blastn | 18470 | 368 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 18948555 | 18948555 | PRJNA474911_P_NODE_5495_length_241_cov_1.350000_g5368_i0 | PRJNA474911 | 5495 | 241 | 1.35 | 3.2535 | Streptococcus | 1301 | Bacteria | Bacteria | 440 | 3.959999999999999e-119 | NTclustered | gi|926460225|gb|CP012588.1| | 1308 | g5368 | i0 | 99.585 | 544.033195020747 | 241 | 1 | 100 | 0 | 1 | 241 | 163288 | 163048 | Streptococcus thermophilus strain MN-BM-A01, complete genome | blastn | 131112 | 440 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 20223407 | 20223407 | PRJNA474911_P_NODE_4156_length_286_cov_1.422222_g4029_i0 | PRJNA474911 | 4156 | 286 | 1.422222 | 4.06755492 | Veillonella | 29465 | Bacteria | Bacteria | 529 | 1e-145 | NTclustered | gi|2672138803|gb|CP138632.1| | 29466 | g4029 | i0 | 100 | 696.755244755245 | 286 | 0 | 100 | 0 | 1 | 286 | 1701 | 1416 | Veillonella parvula strain PK1910 chromosome, complete genome | blastn | 199272 | 529 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella parvula | ||
| 20223425 | 20223425 | PRJNA474911_P_NODE_8456_length_194_cov_2.225564_g8329_i0 | PRJNA474911 | 8456 | 194 | 2.225564 | 4.31759416 | Abiotrophia | 46123 | Bacteria | Bacteria | 359 | 8.809999999999999e-95 | NTclustered | gi|1848537030|gb|CP053988.1| | 46125 | g8329 | i0 | 100 | 548.046391752577 | 194 | 0 | 100 | 0 | 1 | 194 | 863421 | 863614 | Abiotrophia defectiva strain FDAARGOS_785 chromosome, complete genome | blastn | 106321 | 359 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Aerococcaceae | Abiotrophia | Abiotrophia defectiva | ||
| 20849262 | 20849262 | PRJNA474911_P_NODE_7377_length_207_cov_0.876712_g7250_i0 | PRJNA474911 | 7377 | 207 | 0.876712 | 1.81479384 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 383 | 5.65e-102 | NTclustered | gi|2709261975|dbj|AP028322.1| | 1282 | g7250 | i0 | 100 | 83.8067632850242 | 207 | 0 | 100 | 0 | 1 | 207 | 1026320 | 1026526 | Staphylococcus epidermidis KSE124-2 DNA, complete genome | blastn | 17348 | 383 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 20849264 | 20849264 | PRJNA474911_P_NODE_7937_length_203_cov_0.901408_g7810_i0 | PRJNA474911 | 7937 | 203 | 0.901408 | 1.82985824 | Lachnoanaerobaculum umeaense | 617123 | Bacteria | Bacteria | 364 | 2e-96 | NTclustered | gi|1721134208|emb|LR699010.1| | 617123 | g7810 | i0 | 99.02 | 497.812807881773 | 204 | 1 | 100 | 1 | 1 | 203 | 1657920 | 1657717 | Lachnoanaerobaculum umeaense isolate MGYG-HGUT-02522 genome assembly, chromosome: 1 | blastn | 101056 | 364 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnoanaerobaculum | Lachnoanaerobaculum umeaense | ||
| 21498902 | 21498902 | PRJNA474911_P_NODE_3157_length_339_cov_2.323741_g3031_i0 | PRJNA474911 | 3157 | 339 | 2.323741 | 7.87748199 | Veillonella | 29465 | Bacteria | Bacteria | 616 | 9.05e-172 | NTclustered | gi|2672138803|gb|CP138632.1| | 29466 | g3031 | i0 | 99.41 | 544.106194690266 | 339 | 2 | 100 | 0 | 1 | 339 | 886405 | 886067 | Veillonella parvula strain PK1910 chromosome, complete genome | blastn | 184452 | 621 | 0.99194847020934 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella parvula | ||
| 21498917 | 21498917 | PRJNA474911_P_NODE_617_length_827_cov_2.088773_g520_i0 | PRJNA474911 | 617 | 827 | 2.088773 | 17.27415271 | root | 1 | Root_unresolved | Root_unresolved | 1373 | 0 | NTclustered | gi|198385243|gb|EU918661.1| | 1280 | g520 | i0 | 99.866 | 97.5417170495768 | 746 | 1 | 90 | 0 | 82 | 827 | 1920 | 1175 | Staphylococcus aureus strain 8797 transposon Tn916-like tetracycline resistance protein (tetM) gene, complete cds | blastn | 80667 | 1373 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 22124089 | 22124089 | PRJNA474911_P_NODE_6758_length_212_cov_4.728477_g6631_i0 | PRJNA474911 | 6758 | 212 | 4.728477 | 10.02437124 | Tumebacillus algifaecis | 1214604 | Bacteria | Bacteria | 364 | 2.109999999999999e-96 | NTclustered | gi|1229072455|gb|CP022657.1| | 1214604 | g6631 | i0 | 97.653 | 1049.08490566038 | 213 | 4 | 100 | 1 | 1 | 212 | 27691 | 27903 | Tumebacillus algifaecis strain THMBR28, complete genome | blastn | 222406 | 364 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Alicyclobacillaceae | Tumebacillus | Tumebacillus algifaecis | ||
| 24048982 | 24048982 | PRJNA474911_P_NODE_3839_length_301_cov_0.941667_g3712_i0 | PRJNA474911 | 3839 | 301 | 0.941667 | 2.83441767 | Bacillales | 1385 | Bacteria | Bacteria | 409 | 1.44e-109 | NTclustered | gi|1185663818|gb|CP020814.1| | 199441 | g3712 | i0 | 91.864 | 743.594684385382 | 295 | 20 | 97 | 4 | 10 | 301 | 3535388 | 3535095 | Halalkalibacter krulwichiae strain AM31D chromosome, complete genome | blastn | 223822 | 409 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Halalkalibacter | Halalkalibacter krulwichiae | ||
| 26918093 | 26918093 | PRJNA474911_P_NODE_7002_length_209_cov_0.864865_g6875_i0 | PRJNA474911 | 7002 | 209 | 0.864865 | 1.80756785 | Streptococcus rubneri | 1234680 | Bacteria | Bacteria | 139 | 3.039999999999999e-38 | NR | WP_195563958.1 | 1234680 | g6875 | i0 | 100 | 0.976076555023923 | 68 | 0 | 97.6 | 0 | 207 | 4 | 245 | 312 | WP_195563958.1 hypothetical protein [Streptococcus rubneri] | diamond | 204 | 139 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus rubneri | ||
| 32036117 | 32036117 | PRJNA474911_P_NODE_7938_length_203_cov_0.901408_g7811_i0 | PRJNA474911 | 7938 | 203 | 0.901408 | 1.82985824 | Candidatus Mediterraneibacter norwichensis | 2838680 | Bacteria | Bacteria | 47 | 6.74e-4 | NR | HIV52785.1 | 2838680 | g7811 | i0 | 51 | 1.49261083743842 | 49 | 24 | 72.4 | 0 | 7 | 153 | 257 | 305 | HIV52785.1 L-lactate dehydrogenase [Candidatus Mediterraneibacter norwichensis] | diamond | 303 | 47 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Mediterraneibacter | Candidatus Mediterraneibacter norwichensis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;